Shifting the limits in wheat research and breeding using a fully annotated reference genome

The International Wheat Genome Sequencing Consortium (IWGSC), IWGSC Ref; Seq principal investigators:, Appels, R., Eversole, K., Feuillet, C., Keller, B., Rogers, J., Stein, N., IWGSC whole-genome assembly principal investigators:, Pozniak, C. J., Stein, N., Choulet, F., Distelfeld, A., Eversole, K., Poland, J., Rogers, J., Ronen, G., Sharpe, A. G., Whole-genome sequencing and assembly:, Pozniak, C., Ronen, G., Stein, N., Barad, O., Baruch, K., Choulet, F., Keeble-Gagnere, G., Mascher, M., Sharpe, A. G., Ben-Zvi, G., Josselin, A.-A., Hi-C data-based scaffolding:, Stein, N., Mascher, M., Himmelbach, A., Whole-genome assembly quality control and analyses:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Rogers, J., Balfourier, F., Gutierrez-Gonzalez, J., Hayden, M., Josselin, A.-A., Koh, C., Muehlbauer, G., Pasam, R. K., Paux, E., Pozniak, C. J., Rigault, P., Sharpe, A. G., Tibbits, J., Tiwari, V., Pseudomolecule assembly:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Josselin, A.-A., Rogers, J., Ref; Seq genome structure and gene analyses:, Spannagl, M., Choulet, F., Lang, D., Gundlach, H., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Ormanbekova, D., Paux, E., Prade, V., Simkova, H., Wicker, T., Automated annotation:, Choulet, F., Spannagl, M., Swarbreck, D., Rimbert, H., Felder, M., Guilhot, N., Gundlach, H., Haberer, G., Kaithakottil, G., Keilwagen, J., Lang, D., Leroy, P., Lux, T., Mayer, K. F. X., Twardziok, S., Venturini, L., Manual gene curation:, Appels, R., Rimbert, H., Choulet, F., Juhasz, A., Keeble-Gagnere, G., Subgenome comparative analyses:, Choulet, F., Spannagl, M., Lang, D., Abrouk, M., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Wicker, T., Transposable elements:, Choulet, F., Wicker, T., Gundlach, H., Lang, D., Spannagl, M., Phylogenomic analyses:, Lang, D., Spannagl, M., Appels, R., Fischer, I., Transcriptome analyses and RNA-seq data:, Uauy, C., Borrill, P., Ramirez-Gonzalez, R. H., Appels, R., Arnaud, D., Chalabi, S., Chalhoub, B., Choulet, F., Cory, A., Datla, R., Davey, M. W., Hayden, M., Jacobs, J., Lang, D., Robinson, S. J., Spannagl, M., Steuernagel, B., Tibbits, J., Tiwari, V., van Ex, F., Wulff, B. B. H., Whole-genome methylome:, Pozniak, C. J., Robinson, S. J., Sharpe, A. G., Cory, A., Histone mark analyses:, Benhamed, M., Paux, E., Bendahmane, A., Concia, L., Latrasse, D., BAC chromosome MTP IWGSC-Bayer Whole-Genome Profiling (WGP) tags:, Rogers, J., Jacobs, J., Alaux, M., Appels, R., Bartos, J., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., Letellier, T., Olsen, O.-A., Simkova, H., Singh, K., Valarik, M., van der Vossen, E., Vautrin, S., Weining, S., Chromosome LTC mapping and physical mapping quality control:, Korol, A., Frenkel, Z., Fahima, T., Glikson, V., Raats, D., Rogers, J., RH mapping:, Tiwari, V., Gill, B., Paux, E., Poland, J., Optical mapping:, Dolezel, J., Cihalikova, J., Simkova, H., Toegelova, H., Vrana, J., Recombination analyses:, Sourdille, P., Darrier, B., Gene family analyses:, Appels, R., Spannagl, M., Lang, D., Fischer, I., Ormanbekova, D., Prade, V., CBF gene family:, Barabaschi, D., Cattivelli, L., Dehydrin gene family:, Hernandez, P., Galvez, S., Budak, H., NLR gene family:, Steuernagel, B., Jones, J. D. G., Witek, K., Wulff, B. B. H., Yu, G., PPR gene family:, Small, I., Melonek, J., Zhou, R., Prolamin gene family:, Juhasz, A., Belova, T., Appels, R., Olsen, O.-A., WAK gene family:, Kanyuka, K., King, R., Stem solidness (SSt1) QTL team:, Nilsen, K., Walkowiak, S., Pozniak, C. J., Cuthbert, R., Datla, R., Knox, R., Wiebe, K., Xiang, D., Flowering locus C (FLC) gene team:, Rohde, A., Golds, T., Genome size analysis:, Dolezel, J., Cizkova, J., Tibbits, J., Micro; RNA and t; RNA annotation:, Budak, H., Akpinar, B. A., Biyiklioglu, S., Genetic maps and mapping:, Muehlbauer, G., Poland, J., Gao, L., Gutierrez-Gonzalez, J., NDaiye, A., BAC libraries and chromosome sorting:, Dolezel, J., Simkova, H., Cihalikova, J., Kubalakova, M., Safar, J., Vrana, J., BAC pooling, BAC library repository, and access:, Berges, H., Bellec, A., Vautrin, S., IWGSC sequence and data repository and access:, Alaux, M., Alfama, F., Adam-Blondon, A.-F., Flores, R., Guerche, C., Letellier, T., Loaec, M., Quesneville, H., Physical maps and BAC-based sequences:, 1; A BAC sequencing and assembly:, Pozniak, C. J., Sharpe, A. G., Walkowiak, S., Budak, H., Condie, J., Ens, J., Koh, C., Maclachlan, R., Tan, Y., Wicker, T., 1; B BAC sequencing and assembly:, Choulet, F., Paux, E., Alberti, A., Aury, J.-M., Balfourier, F., Barbe, V., Couloux, A., Cruaud, C., Labadie, K., Mangenot, S., Wincker, P., 1; D, 4; D, and 6; D physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 2; AL physical mapping:, Singh, K., Chhuneja, P., Gupta, O. P., Jindal, S., Kaur, P., Malik, P., Sharma, P., Yadav, B., 2; AS physical mapping:, Singh, N. K., Khurana, J., Chaudhary, C., Khurana, P., Kumar, V., Mahato, A., Mathur, S., Sevanthi, A., Sharma, N., Tomar, R. S., 2; B, 2; D, 4; B, 5; BL, and 5; DL IWGSC-Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers, J., Jacobs, J., Alaux, M., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., van der Vossen, E., Vautrin, S., 3; AL physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 3; DS physical mapping and BAC sequencing and assembly:, Bartos, J., Holusova, K., Plihal, O., 3; DL BAC sequencing and assembly:, Clark, M. D., Heavens, D., Kettleborough, G., Wright, J., 4; A physical mapping, BAC sequencing, assembly, and annotation:, Valarik, M., Abrouk, M., Balcarkova, B., Holusova, K., Hu, Y., Luo, M., 5; BS BAC sequencing and assembly:, Salina, E., Ravin, N., Skryabin, K., Beletsky, A., Kadnikov, V., Mardanov, A., Nesterov, M., Rakitin, A., Sergeeva, E., 6; B BAC sequencing and assembly:, Handa, H., Kanamori, H., Katagiri, S., Kobayashi, F., Nasuda, S., Tanaka, T., Wu, J., 7; A physical mapping and BAC sequencing:, Appels, R., Hayden, M., Keeble-Gagnere, G., Rigault, P., Tibbits, J., 7; B physical mapping, BAC sequencing, and assembly:, Olsen, O.-A., Belova, T., Cattonaro, F., Jiumeng, M., Kugler, K., Mayer, K. F. X., Pfeifer, M., Sandve, S., Xun, X., Zhan, B., 7; DS BAC sequencing and assembly:, Simkova, H., Abrouk, M., Batley, J., Bayer, P. E., Edwards, D., Hayashi, S., Toegelova, H., Tulpova, Z., Visendi, P., 7; DL physical mapping and BAC sequencing:, Weining, S., Cui, L., Du, X., Feng, K., Nie, X., Tong, W., Wang, L., Figures:, Borrill, P., Gundlach, H., Galvez, S., Kaithakottil, G., Lang, D., Lux, T., Mascher, M., Ormanbekova, D., Prade, V., Ramirez-Gonzalez, R. H., Spannagl, M., Stein, N., Uauy, C., Venturini, L., Manuscript writing team:, Stein, N., Appels, R., Eversole, K., Rogers, J., Borrill, P., Cattivelli, L., Choulet, F., Hernandez, P., Kanyuka, K., Lang, D., Mascher, M., Nilsen, K., Paux, E., Pozniak, C. J., Ramirez-Gonzalez, R. H., Simkova, H., Small, I., Spannagl, M., Swarbreck, D., Uauy, C.
American Association for the Advancement of Science (AAAS)
Published 2018
Publication Date:
2018-08-17
Publisher:
American Association for the Advancement of Science (AAAS)
Print ISSN:
0036-8075
Electronic ISSN:
1095-9203
Topics:
Biology
Chemistry and Pharmacology
Geosciences
Computer Science
Medicine
Natural Sciences in General
Physics
Keywords:
Botany, Ecology, Online Only
Published by:
_version_ 1836399030294282240
autor The International Wheat Genome Sequencing Consortium (IWGSC), IWGSC Ref; Seq principal investigators:, Appels, R., Eversole, K., Feuillet, C., Keller, B., Rogers, J., Stein, N., IWGSC whole-genome assembly principal investigators:, Pozniak, C. J., Stein, N., Choulet, F., Distelfeld, A., Eversole, K., Poland, J., Rogers, J., Ronen, G., Sharpe, A. G., Whole-genome sequencing and assembly:, Pozniak, C., Ronen, G., Stein, N., Barad, O., Baruch, K., Choulet, F., Keeble-Gagnere, G., Mascher, M., Sharpe, A. G., Ben-Zvi, G., Josselin, A.-A., Hi-C data-based scaffolding:, Stein, N., Mascher, M., Himmelbach, A., Whole-genome assembly quality control and analyses:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Rogers, J., Balfourier, F., Gutierrez-Gonzalez, J., Hayden, M., Josselin, A.-A., Koh, C., Muehlbauer, G., Pasam, R. K., Paux, E., Pozniak, C. J., Rigault, P., Sharpe, A. G., Tibbits, J., Tiwari, V., Pseudomolecule assembly:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Josselin, A.-A., Rogers, J., Ref; Seq genome structure and gene analyses:, Spannagl, M., Choulet, F., Lang, D., Gundlach, H., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Ormanbekova, D., Paux, E., Prade, V., Simkova, H., Wicker, T., Automated annotation:, Choulet, F., Spannagl, M., Swarbreck, D., Rimbert, H., Felder, M., Guilhot, N., Gundlach, H., Haberer, G., Kaithakottil, G., Keilwagen, J., Lang, D., Leroy, P., Lux, T., Mayer, K. F. X., Twardziok, S., Venturini, L., Manual gene curation:, Appels, R., Rimbert, H., Choulet, F., Juhasz, A., Keeble-Gagnere, G., Subgenome comparative analyses:, Choulet, F., Spannagl, M., Lang, D., Abrouk, M., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Wicker, T., Transposable elements:, Choulet, F., Wicker, T., Gundlach, H., Lang, D., Spannagl, M., Phylogenomic analyses:, Lang, D., Spannagl, M., Appels, R., Fischer, I., Transcriptome analyses and RNA-seq data:, Uauy, C., Borrill, P., Ramirez-Gonzalez, R. H., Appels, R., Arnaud, D., Chalabi, S., Chalhoub, B., Choulet, F., Cory, A., Datla, R., Davey, M. W., Hayden, M., Jacobs, J., Lang, D., Robinson, S. J., Spannagl, M., Steuernagel, B., Tibbits, J., Tiwari, V., van Ex, F., Wulff, B. B. H., Whole-genome methylome:, Pozniak, C. J., Robinson, S. J., Sharpe, A. G., Cory, A., Histone mark analyses:, Benhamed, M., Paux, E., Bendahmane, A., Concia, L., Latrasse, D., BAC chromosome MTP IWGSC-Bayer Whole-Genome Profiling (WGP) tags:, Rogers, J., Jacobs, J., Alaux, M., Appels, R., Bartos, J., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., Letellier, T., Olsen, O.-A., Simkova, H., Singh, K., Valarik, M., van der Vossen, E., Vautrin, S., Weining, S., Chromosome LTC mapping and physical mapping quality control:, Korol, A., Frenkel, Z., Fahima, T., Glikson, V., Raats, D., Rogers, J., RH mapping:, Tiwari, V., Gill, B., Paux, E., Poland, J., Optical mapping:, Dolezel, J., Cihalikova, J., Simkova, H., Toegelova, H., Vrana, J., Recombination analyses:, Sourdille, P., Darrier, B., Gene family analyses:, Appels, R., Spannagl, M., Lang, D., Fischer, I., Ormanbekova, D., Prade, V., CBF gene family:, Barabaschi, D., Cattivelli, L., Dehydrin gene family:, Hernandez, P., Galvez, S., Budak, H., NLR gene family:, Steuernagel, B., Jones, J. D. G., Witek, K., Wulff, B. B. H., Yu, G., PPR gene family:, Small, I., Melonek, J., Zhou, R., Prolamin gene family:, Juhasz, A., Belova, T., Appels, R., Olsen, O.-A., WAK gene family:, Kanyuka, K., King, R., Stem solidness (SSt1) QTL team:, Nilsen, K., Walkowiak, S., Pozniak, C. J., Cuthbert, R., Datla, R., Knox, R., Wiebe, K., Xiang, D., Flowering locus C (FLC) gene team:, Rohde, A., Golds, T., Genome size analysis:, Dolezel, J., Cizkova, J., Tibbits, J., Micro; RNA and t; RNA annotation:, Budak, H., Akpinar, B. A., Biyiklioglu, S., Genetic maps and mapping:, Muehlbauer, G., Poland, J., Gao, L., Gutierrez-Gonzalez, J., NDaiye, A., BAC libraries and chromosome sorting:, Dolezel, J., Simkova, H., Cihalikova, J., Kubalakova, M., Safar, J., Vrana, J., BAC pooling, BAC library repository, and access:, Berges, H., Bellec, A., Vautrin, S., IWGSC sequence and data repository and access:, Alaux, M., Alfama, F., Adam-Blondon, A.-F., Flores, R., Guerche, C., Letellier, T., Loaec, M., Quesneville, H., Physical maps and BAC-based sequences:, 1; A BAC sequencing and assembly:, Pozniak, C. J., Sharpe, A. G., Walkowiak, S., Budak, H., Condie, J., Ens, J., Koh, C., Maclachlan, R., Tan, Y., Wicker, T., 1; B BAC sequencing and assembly:, Choulet, F., Paux, E., Alberti, A., Aury, J.-M., Balfourier, F., Barbe, V., Couloux, A., Cruaud, C., Labadie, K., Mangenot, S., Wincker, P., 1; D, 4; D, and 6; D physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 2; AL physical mapping:, Singh, K., Chhuneja, P., Gupta, O. P., Jindal, S., Kaur, P., Malik, P., Sharma, P., Yadav, B., 2; AS physical mapping:, Singh, N. K., Khurana, J., Chaudhary, C., Khurana, P., Kumar, V., Mahato, A., Mathur, S., Sevanthi, A., Sharma, N., Tomar, R. S., 2; B, 2; D, 4; B, 5; BL, and 5; DL IWGSC-Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers, J., Jacobs, J., Alaux, M., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., van der Vossen, E., Vautrin, S., 3; AL physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 3; DS physical mapping and BAC sequencing and assembly:, Bartos, J., Holusova, K., Plihal, O., 3; DL BAC sequencing and assembly:, Clark, M. D., Heavens, D., Kettleborough, G., Wright, J., 4; A physical mapping, BAC sequencing, assembly, and annotation:, Valarik, M., Abrouk, M., Balcarkova, B., Holusova, K., Hu, Y., Luo, M., 5; BS BAC sequencing and assembly:, Salina, E., Ravin, N., Skryabin, K., Beletsky, A., Kadnikov, V., Mardanov, A., Nesterov, M., Rakitin, A., Sergeeva, E., 6; B BAC sequencing and assembly:, Handa, H., Kanamori, H., Katagiri, S., Kobayashi, F., Nasuda, S., Tanaka, T., Wu, J., 7; A physical mapping and BAC sequencing:, Appels, R., Hayden, M., Keeble-Gagnere, G., Rigault, P., Tibbits, J., 7; B physical mapping, BAC sequencing, and assembly:, Olsen, O.-A., Belova, T., Cattonaro, F., Jiumeng, M., Kugler, K., Mayer, K. F. X., Pfeifer, M., Sandve, S., Xun, X., Zhan, B., 7; DS BAC sequencing and assembly:, Simkova, H., Abrouk, M., Batley, J., Bayer, P. E., Edwards, D., Hayashi, S., Toegelova, H., Tulpova, Z., Visendi, P., 7; DL physical mapping and BAC sequencing:, Weining, S., Cui, L., Du, X., Feng, K., Nie, X., Tong, W., Wang, L., Figures:, Borrill, P., Gundlach, H., Galvez, S., Kaithakottil, G., Lang, D., Lux, T., Mascher, M., Ormanbekova, D., Prade, V., Ramirez-Gonzalez, R. H., Spannagl, M., Stein, N., Uauy, C., Venturini, L., Manuscript writing team:, Stein, N., Appels, R., Eversole, K., Rogers, J., Borrill, P., Cattivelli, L., Choulet, F., Hernandez, P., Kanyuka, K., Lang, D., Mascher, M., Nilsen, K., Paux, E., Pozniak, C. J., Ramirez-Gonzalez, R. H., Simkova, H., Small, I., Spannagl, M., Swarbreck, D., Uauy, C.
beschreibung An annotated reference sequence representing the hexaploid bread wheat genome in 21 pseudomolecules has been analyzed to identify the distribution and genomic context of coding and noncoding elements across the A, B, and D subgenomes. With an estimated coverage of 94% of the genome and containing 107,891 high-confidence gene models, this assembly enabled the discovery of tissue- and developmental stage–related coexpression networks by providing a transcriptome atlas representing major stages of wheat development. Dynamics of complex gene families involved in environmental adaptation and end-use quality were revealed at subgenome resolution and contextualized to known agronomic single-gene or quantitative trait loci. This community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding.
citation_standardnr 6320909
datenlieferant ipn_articles
feed_id 25
feed_publisher American Association for the Advancement of Science (AAAS)
feed_publisher_url http://www.aaas.org/
insertion_date 2018-08-17
journaleissn 1095-9203
journalissn 0036-8075
publikationsjahr_anzeige 2018
publikationsjahr_facette 2018
publikationsjahr_intervall 7984:2015-2019
publikationsjahr_sort 2018
publisher American Association for the Advancement of Science (AAAS)
quelle Science
relation http://science.sciencemag.org/cgi/content/short/361/6403/eaar7191?rss=1
schlagwort Botany, Ecology, Online Only
search_space articles
shingle_author_1 The International Wheat Genome Sequencing Consortium (IWGSC), IWGSC Ref; Seq principal investigators:, Appels, R., Eversole, K., Feuillet, C., Keller, B., Rogers, J., Stein, N., IWGSC whole-genome assembly principal investigators:, Pozniak, C. J., Stein, N., Choulet, F., Distelfeld, A., Eversole, K., Poland, J., Rogers, J., Ronen, G., Sharpe, A. G., Whole-genome sequencing and assembly:, Pozniak, C., Ronen, G., Stein, N., Barad, O., Baruch, K., Choulet, F., Keeble-Gagnere, G., Mascher, M., Sharpe, A. G., Ben-Zvi, G., Josselin, A.-A., Hi-C data-based scaffolding:, Stein, N., Mascher, M., Himmelbach, A., Whole-genome assembly quality control and analyses:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Rogers, J., Balfourier, F., Gutierrez-Gonzalez, J., Hayden, M., Josselin, A.-A., Koh, C., Muehlbauer, G., Pasam, R. K., Paux, E., Pozniak, C. J., Rigault, P., Sharpe, A. G., Tibbits, J., Tiwari, V., Pseudomolecule assembly:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Josselin, A.-A., Rogers, J., Ref; Seq genome structure and gene analyses:, Spannagl, M., Choulet, F., Lang, D., Gundlach, H., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Ormanbekova, D., Paux, E., Prade, V., Simkova, H., Wicker, T., Automated annotation:, Choulet, F., Spannagl, M., Swarbreck, D., Rimbert, H., Felder, M., Guilhot, N., Gundlach, H., Haberer, G., Kaithakottil, G., Keilwagen, J., Lang, D., Leroy, P., Lux, T., Mayer, K. F. X., Twardziok, S., Venturini, L., Manual gene curation:, Appels, R., Rimbert, H., Choulet, F., Juhasz, A., Keeble-Gagnere, G., Subgenome comparative analyses:, Choulet, F., Spannagl, M., Lang, D., Abrouk, M., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Wicker, T., Transposable elements:, Choulet, F., Wicker, T., Gundlach, H., Lang, D., Spannagl, M., Phylogenomic analyses:, Lang, D., Spannagl, M., Appels, R., Fischer, I., Transcriptome analyses and RNA-seq data:, Uauy, C., Borrill, P., Ramirez-Gonzalez, R. H., Appels, R., Arnaud, D., Chalabi, S., Chalhoub, B., Choulet, F., Cory, A., Datla, R., Davey, M. W., Hayden, M., Jacobs, J., Lang, D., Robinson, S. J., Spannagl, M., Steuernagel, B., Tibbits, J., Tiwari, V., van Ex, F., Wulff, B. B. H., Whole-genome methylome:, Pozniak, C. J., Robinson, S. J., Sharpe, A. G., Cory, A., Histone mark analyses:, Benhamed, M., Paux, E., Bendahmane, A., Concia, L., Latrasse, D., BAC chromosome MTP IWGSC-Bayer Whole-Genome Profiling (WGP) tags:, Rogers, J., Jacobs, J., Alaux, M., Appels, R., Bartos, J., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., Letellier, T., Olsen, O.-A., Simkova, H., Singh, K., Valarik, M., van der Vossen, E., Vautrin, S., Weining, S., Chromosome LTC mapping and physical mapping quality control:, Korol, A., Frenkel, Z., Fahima, T., Glikson, V., Raats, D., Rogers, J., RH mapping:, Tiwari, V., Gill, B., Paux, E., Poland, J., Optical mapping:, Dolezel, J., Cihalikova, J., Simkova, H., Toegelova, H., Vrana, J., Recombination analyses:, Sourdille, P., Darrier, B., Gene family analyses:, Appels, R., Spannagl, M., Lang, D., Fischer, I., Ormanbekova, D., Prade, V., CBF gene family:, Barabaschi, D., Cattivelli, L., Dehydrin gene family:, Hernandez, P., Galvez, S., Budak, H., NLR gene family:, Steuernagel, B., Jones, J. D. G., Witek, K., Wulff, B. B. H., Yu, G., PPR gene family:, Small, I., Melonek, J., Zhou, R., Prolamin gene family:, Juhasz, A., Belova, T., Appels, R., Olsen, O.-A., WAK gene family:, Kanyuka, K., King, R., Stem solidness (SSt1) QTL team:, Nilsen, K., Walkowiak, S., Pozniak, C. J., Cuthbert, R., Datla, R., Knox, R., Wiebe, K., Xiang, D., Flowering locus C (FLC) gene team:, Rohde, A., Golds, T., Genome size analysis:, Dolezel, J., Cizkova, J., Tibbits, J., Micro; RNA and t; RNA annotation:, Budak, H., Akpinar, B. A., Biyiklioglu, S., Genetic maps and mapping:, Muehlbauer, G., Poland, J., Gao, L., Gutierrez-Gonzalez, J., NDaiye, A., BAC libraries and chromosome sorting:, Dolezel, J., Simkova, H., Cihalikova, J., Kubalakova, M., Safar, J., Vrana, J., BAC pooling, BAC library repository, and access:, Berges, H., Bellec, A., Vautrin, S., IWGSC sequence and data repository and access:, Alaux, M., Alfama, F., Adam-Blondon, A.-F., Flores, R., Guerche, C., Letellier, T., Loaec, M., Quesneville, H., Physical maps and BAC-based sequences:, 1; A BAC sequencing and assembly:, Pozniak, C. J., Sharpe, A. G., Walkowiak, S., Budak, H., Condie, J., Ens, J., Koh, C., Maclachlan, R., Tan, Y., Wicker, T., 1; B BAC sequencing and assembly:, Choulet, F., Paux, E., Alberti, A., Aury, J.-M., Balfourier, F., Barbe, V., Couloux, A., Cruaud, C., Labadie, K., Mangenot, S., Wincker, P., 1; D, 4; D, and 6; D physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 2; AL physical mapping:, Singh, K., Chhuneja, P., Gupta, O. P., Jindal, S., Kaur, P., Malik, P., Sharma, P., Yadav, B., 2; AS physical mapping:, Singh, N. K., Khurana, J., Chaudhary, C., Khurana, P., Kumar, V., Mahato, A., Mathur, S., Sevanthi, A., Sharma, N., Tomar, R. S., 2; B, 2; D, 4; B, 5; BL, and 5; DL IWGSC-Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers, J., Jacobs, J., Alaux, M., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., van der Vossen, E., Vautrin, S., 3; AL physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 3; DS physical mapping and BAC sequencing and assembly:, Bartos, J., Holusova, K., Plihal, O., 3; DL BAC sequencing and assembly:, Clark, M. D., Heavens, D., Kettleborough, G., Wright, J., 4; A physical mapping, BAC sequencing, assembly, and annotation:, Valarik, M., Abrouk, M., Balcarkova, B., Holusova, K., Hu, Y., Luo, M., 5; BS BAC sequencing and assembly:, Salina, E., Ravin, N., Skryabin, K., Beletsky, A., Kadnikov, V., Mardanov, A., Nesterov, M., Rakitin, A., Sergeeva, E., 6; B BAC sequencing and assembly:, Handa, H., Kanamori, H., Katagiri, S., Kobayashi, F., Nasuda, S., Tanaka, T., Wu, J., 7; A physical mapping and BAC sequencing:, Appels, R., Hayden, M., Keeble-Gagnere, G., Rigault, P., Tibbits, J., 7; B physical mapping, BAC sequencing, and assembly:, Olsen, O.-A., Belova, T., Cattonaro, F., Jiumeng, M., Kugler, K., Mayer, K. F. X., Pfeifer, M., Sandve, S., Xun, X., Zhan, B., 7; DS BAC sequencing and assembly:, Simkova, H., Abrouk, M., Batley, J., Bayer, P. E., Edwards, D., Hayashi, S., Toegelova, H., Tulpova, Z., Visendi, P., 7; DL physical mapping and BAC sequencing:, Weining, S., Cui, L., Du, X., Feng, K., Nie, X., Tong, W., Wang, L., Figures:, Borrill, P., Gundlach, H., Galvez, S., Kaithakottil, G., Lang, D., Lux, T., Mascher, M., Ormanbekova, D., Prade, V., Ramirez-Gonzalez, R. H., Spannagl, M., Stein, N., Uauy, C., Venturini, L., Manuscript writing team:, Stein, N., Appels, R., Eversole, K., Rogers, J., Borrill, P., Cattivelli, L., Choulet, F., Hernandez, P., Kanyuka, K., Lang, D., Mascher, M., Nilsen, K., Paux, E., Pozniak, C. J., Ramirez-Gonzalez, R. H., Simkova, H., Small, I., Spannagl, M., Swarbreck, D., Uauy, C.
shingle_author_2 The International Wheat Genome Sequencing Consortium (IWGSC), IWGSC Ref; Seq principal investigators:, Appels, R., Eversole, K., Feuillet, C., Keller, B., Rogers, J., Stein, N., IWGSC whole-genome assembly principal investigators:, Pozniak, C. J., Stein, N., Choulet, F., Distelfeld, A., Eversole, K., Poland, J., Rogers, J., Ronen, G., Sharpe, A. G., Whole-genome sequencing and assembly:, Pozniak, C., Ronen, G., Stein, N., Barad, O., Baruch, K., Choulet, F., Keeble-Gagnere, G., Mascher, M., Sharpe, A. G., Ben-Zvi, G., Josselin, A.-A., Hi-C data-based scaffolding:, Stein, N., Mascher, M., Himmelbach, A., Whole-genome assembly quality control and analyses:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Rogers, J., Balfourier, F., Gutierrez-Gonzalez, J., Hayden, M., Josselin, A.-A., Koh, C., Muehlbauer, G., Pasam, R. K., Paux, E., Pozniak, C. J., Rigault, P., Sharpe, A. G., Tibbits, J., Tiwari, V., Pseudomolecule assembly:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Josselin, A.-A., Rogers, J., Ref; Seq genome structure and gene analyses:, Spannagl, M., Choulet, F., Lang, D., Gundlach, H., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Ormanbekova, D., Paux, E., Prade, V., Simkova, H., Wicker, T., Automated annotation:, Choulet, F., Spannagl, M., Swarbreck, D., Rimbert, H., Felder, M., Guilhot, N., Gundlach, H., Haberer, G., Kaithakottil, G., Keilwagen, J., Lang, D., Leroy, P., Lux, T., Mayer, K. F. X., Twardziok, S., Venturini, L., Manual gene curation:, Appels, R., Rimbert, H., Choulet, F., Juhasz, A., Keeble-Gagnere, G., Subgenome comparative analyses:, Choulet, F., Spannagl, M., Lang, D., Abrouk, M., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Wicker, T., Transposable elements:, Choulet, F., Wicker, T., Gundlach, H., Lang, D., Spannagl, M., Phylogenomic analyses:, Lang, D., Spannagl, M., Appels, R., Fischer, I., Transcriptome analyses and RNA-seq data:, Uauy, C., Borrill, P., Ramirez-Gonzalez, R. H., Appels, R., Arnaud, D., Chalabi, S., Chalhoub, B., Choulet, F., Cory, A., Datla, R., Davey, M. W., Hayden, M., Jacobs, J., Lang, D., Robinson, S. J., Spannagl, M., Steuernagel, B., Tibbits, J., Tiwari, V., van Ex, F., Wulff, B. B. H., Whole-genome methylome:, Pozniak, C. J., Robinson, S. J., Sharpe, A. G., Cory, A., Histone mark analyses:, Benhamed, M., Paux, E., Bendahmane, A., Concia, L., Latrasse, D., BAC chromosome MTP IWGSC-Bayer Whole-Genome Profiling (WGP) tags:, Rogers, J., Jacobs, J., Alaux, M., Appels, R., Bartos, J., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., Letellier, T., Olsen, O.-A., Simkova, H., Singh, K., Valarik, M., van der Vossen, E., Vautrin, S., Weining, S., Chromosome LTC mapping and physical mapping quality control:, Korol, A., Frenkel, Z., Fahima, T., Glikson, V., Raats, D., Rogers, J., RH mapping:, Tiwari, V., Gill, B., Paux, E., Poland, J., Optical mapping:, Dolezel, J., Cihalikova, J., Simkova, H., Toegelova, H., Vrana, J., Recombination analyses:, Sourdille, P., Darrier, B., Gene family analyses:, Appels, R., Spannagl, M., Lang, D., Fischer, I., Ormanbekova, D., Prade, V., CBF gene family:, Barabaschi, D., Cattivelli, L., Dehydrin gene family:, Hernandez, P., Galvez, S., Budak, H., NLR gene family:, Steuernagel, B., Jones, J. D. G., Witek, K., Wulff, B. B. H., Yu, G., PPR gene family:, Small, I., Melonek, J., Zhou, R., Prolamin gene family:, Juhasz, A., Belova, T., Appels, R., Olsen, O.-A., WAK gene family:, Kanyuka, K., King, R., Stem solidness (SSt1) QTL team:, Nilsen, K., Walkowiak, S., Pozniak, C. J., Cuthbert, R., Datla, R., Knox, R., Wiebe, K., Xiang, D., Flowering locus C (FLC) gene team:, Rohde, A., Golds, T., Genome size analysis:, Dolezel, J., Cizkova, J., Tibbits, J., Micro; RNA and t; RNA annotation:, Budak, H., Akpinar, B. A., Biyiklioglu, S., Genetic maps and mapping:, Muehlbauer, G., Poland, J., Gao, L., Gutierrez-Gonzalez, J., NDaiye, A., BAC libraries and chromosome sorting:, Dolezel, J., Simkova, H., Cihalikova, J., Kubalakova, M., Safar, J., Vrana, J., BAC pooling, BAC library repository, and access:, Berges, H., Bellec, A., Vautrin, S., IWGSC sequence and data repository and access:, Alaux, M., Alfama, F., Adam-Blondon, A.-F., Flores, R., Guerche, C., Letellier, T., Loaec, M., Quesneville, H., Physical maps and BAC-based sequences:, 1; A BAC sequencing and assembly:, Pozniak, C. J., Sharpe, A. G., Walkowiak, S., Budak, H., Condie, J., Ens, J., Koh, C., Maclachlan, R., Tan, Y., Wicker, T., 1; B BAC sequencing and assembly:, Choulet, F., Paux, E., Alberti, A., Aury, J.-M., Balfourier, F., Barbe, V., Couloux, A., Cruaud, C., Labadie, K., Mangenot, S., Wincker, P., 1; D, 4; D, and 6; D physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 2; AL physical mapping:, Singh, K., Chhuneja, P., Gupta, O. P., Jindal, S., Kaur, P., Malik, P., Sharma, P., Yadav, B., 2; AS physical mapping:, Singh, N. K., Khurana, J., Chaudhary, C., Khurana, P., Kumar, V., Mahato, A., Mathur, S., Sevanthi, A., Sharma, N., Tomar, R. S., 2; B, 2; D, 4; B, 5; BL, and 5; DL IWGSC-Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers, J., Jacobs, J., Alaux, M., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., van der Vossen, E., Vautrin, S., 3; AL physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 3; DS physical mapping and BAC sequencing and assembly:, Bartos, J., Holusova, K., Plihal, O., 3; DL BAC sequencing and assembly:, Clark, M. D., Heavens, D., Kettleborough, G., Wright, J., 4; A physical mapping, BAC sequencing, assembly, and annotation:, Valarik, M., Abrouk, M., Balcarkova, B., Holusova, K., Hu, Y., Luo, M., 5; BS BAC sequencing and assembly:, Salina, E., Ravin, N., Skryabin, K., Beletsky, A., Kadnikov, V., Mardanov, A., Nesterov, M., Rakitin, A., Sergeeva, E., 6; B BAC sequencing and assembly:, Handa, H., Kanamori, H., Katagiri, S., Kobayashi, F., Nasuda, S., Tanaka, T., Wu, J., 7; A physical mapping and BAC sequencing:, Appels, R., Hayden, M., Keeble-Gagnere, G., Rigault, P., Tibbits, J., 7; B physical mapping, BAC sequencing, and assembly:, Olsen, O.-A., Belova, T., Cattonaro, F., Jiumeng, M., Kugler, K., Mayer, K. F. X., Pfeifer, M., Sandve, S., Xun, X., Zhan, B., 7; DS BAC sequencing and assembly:, Simkova, H., Abrouk, M., Batley, J., Bayer, P. E., Edwards, D., Hayashi, S., Toegelova, H., Tulpova, Z., Visendi, P., 7; DL physical mapping and BAC sequencing:, Weining, S., Cui, L., Du, X., Feng, K., Nie, X., Tong, W., Wang, L., Figures:, Borrill, P., Gundlach, H., Galvez, S., Kaithakottil, G., Lang, D., Lux, T., Mascher, M., Ormanbekova, D., Prade, V., Ramirez-Gonzalez, R. H., Spannagl, M., Stein, N., Uauy, C., Venturini, L., Manuscript writing team:, Stein, N., Appels, R., Eversole, K., Rogers, J., Borrill, P., Cattivelli, L., Choulet, F., Hernandez, P., Kanyuka, K., Lang, D., Mascher, M., Nilsen, K., Paux, E., Pozniak, C. J., Ramirez-Gonzalez, R. H., Simkova, H., Small, I., Spannagl, M., Swarbreck, D., Uauy, C.
shingle_author_3 The International Wheat Genome Sequencing Consortium (IWGSC), IWGSC Ref; Seq principal investigators:, Appels, R., Eversole, K., Feuillet, C., Keller, B., Rogers, J., Stein, N., IWGSC whole-genome assembly principal investigators:, Pozniak, C. J., Stein, N., Choulet, F., Distelfeld, A., Eversole, K., Poland, J., Rogers, J., Ronen, G., Sharpe, A. G., Whole-genome sequencing and assembly:, Pozniak, C., Ronen, G., Stein, N., Barad, O., Baruch, K., Choulet, F., Keeble-Gagnere, G., Mascher, M., Sharpe, A. G., Ben-Zvi, G., Josselin, A.-A., Hi-C data-based scaffolding:, Stein, N., Mascher, M., Himmelbach, A., Whole-genome assembly quality control and analyses:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Rogers, J., Balfourier, F., Gutierrez-Gonzalez, J., Hayden, M., Josselin, A.-A., Koh, C., Muehlbauer, G., Pasam, R. K., Paux, E., Pozniak, C. J., Rigault, P., Sharpe, A. G., Tibbits, J., Tiwari, V., Pseudomolecule assembly:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Josselin, A.-A., Rogers, J., Ref; Seq genome structure and gene analyses:, Spannagl, M., Choulet, F., Lang, D., Gundlach, H., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Ormanbekova, D., Paux, E., Prade, V., Simkova, H., Wicker, T., Automated annotation:, Choulet, F., Spannagl, M., Swarbreck, D., Rimbert, H., Felder, M., Guilhot, N., Gundlach, H., Haberer, G., Kaithakottil, G., Keilwagen, J., Lang, D., Leroy, P., Lux, T., Mayer, K. F. X., Twardziok, S., Venturini, L., Manual gene curation:, Appels, R., Rimbert, H., Choulet, F., Juhasz, A., Keeble-Gagnere, G., Subgenome comparative analyses:, Choulet, F., Spannagl, M., Lang, D., Abrouk, M., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Wicker, T., Transposable elements:, Choulet, F., Wicker, T., Gundlach, H., Lang, D., Spannagl, M., Phylogenomic analyses:, Lang, D., Spannagl, M., Appels, R., Fischer, I., Transcriptome analyses and RNA-seq data:, Uauy, C., Borrill, P., Ramirez-Gonzalez, R. H., Appels, R., Arnaud, D., Chalabi, S., Chalhoub, B., Choulet, F., Cory, A., Datla, R., Davey, M. W., Hayden, M., Jacobs, J., Lang, D., Robinson, S. J., Spannagl, M., Steuernagel, B., Tibbits, J., Tiwari, V., van Ex, F., Wulff, B. B. H., Whole-genome methylome:, Pozniak, C. J., Robinson, S. J., Sharpe, A. G., Cory, A., Histone mark analyses:, Benhamed, M., Paux, E., Bendahmane, A., Concia, L., Latrasse, D., BAC chromosome MTP IWGSC-Bayer Whole-Genome Profiling (WGP) tags:, Rogers, J., Jacobs, J., Alaux, M., Appels, R., Bartos, J., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., Letellier, T., Olsen, O.-A., Simkova, H., Singh, K., Valarik, M., van der Vossen, E., Vautrin, S., Weining, S., Chromosome LTC mapping and physical mapping quality control:, Korol, A., Frenkel, Z., Fahima, T., Glikson, V., Raats, D., Rogers, J., RH mapping:, Tiwari, V., Gill, B., Paux, E., Poland, J., Optical mapping:, Dolezel, J., Cihalikova, J., Simkova, H., Toegelova, H., Vrana, J., Recombination analyses:, Sourdille, P., Darrier, B., Gene family analyses:, Appels, R., Spannagl, M., Lang, D., Fischer, I., Ormanbekova, D., Prade, V., CBF gene family:, Barabaschi, D., Cattivelli, L., Dehydrin gene family:, Hernandez, P., Galvez, S., Budak, H., NLR gene family:, Steuernagel, B., Jones, J. D. G., Witek, K., Wulff, B. B. H., Yu, G., PPR gene family:, Small, I., Melonek, J., Zhou, R., Prolamin gene family:, Juhasz, A., Belova, T., Appels, R., Olsen, O.-A., WAK gene family:, Kanyuka, K., King, R., Stem solidness (SSt1) QTL team:, Nilsen, K., Walkowiak, S., Pozniak, C. J., Cuthbert, R., Datla, R., Knox, R., Wiebe, K., Xiang, D., Flowering locus C (FLC) gene team:, Rohde, A., Golds, T., Genome size analysis:, Dolezel, J., Cizkova, J., Tibbits, J., Micro; RNA and t; RNA annotation:, Budak, H., Akpinar, B. A., Biyiklioglu, S., Genetic maps and mapping:, Muehlbauer, G., Poland, J., Gao, L., Gutierrez-Gonzalez, J., NDaiye, A., BAC libraries and chromosome sorting:, Dolezel, J., Simkova, H., Cihalikova, J., Kubalakova, M., Safar, J., Vrana, J., BAC pooling, BAC library repository, and access:, Berges, H., Bellec, A., Vautrin, S., IWGSC sequence and data repository and access:, Alaux, M., Alfama, F., Adam-Blondon, A.-F., Flores, R., Guerche, C., Letellier, T., Loaec, M., Quesneville, H., Physical maps and BAC-based sequences:, 1; A BAC sequencing and assembly:, Pozniak, C. J., Sharpe, A. G., Walkowiak, S., Budak, H., Condie, J., Ens, J., Koh, C., Maclachlan, R., Tan, Y., Wicker, T., 1; B BAC sequencing and assembly:, Choulet, F., Paux, E., Alberti, A., Aury, J.-M., Balfourier, F., Barbe, V., Couloux, A., Cruaud, C., Labadie, K., Mangenot, S., Wincker, P., 1; D, 4; D, and 6; D physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 2; AL physical mapping:, Singh, K., Chhuneja, P., Gupta, O. P., Jindal, S., Kaur, P., Malik, P., Sharma, P., Yadav, B., 2; AS physical mapping:, Singh, N. K., Khurana, J., Chaudhary, C., Khurana, P., Kumar, V., Mahato, A., Mathur, S., Sevanthi, A., Sharma, N., Tomar, R. S., 2; B, 2; D, 4; B, 5; BL, and 5; DL IWGSC-Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers, J., Jacobs, J., Alaux, M., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., van der Vossen, E., Vautrin, S., 3; AL physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 3; DS physical mapping and BAC sequencing and assembly:, Bartos, J., Holusova, K., Plihal, O., 3; DL BAC sequencing and assembly:, Clark, M. D., Heavens, D., Kettleborough, G., Wright, J., 4; A physical mapping, BAC sequencing, assembly, and annotation:, Valarik, M., Abrouk, M., Balcarkova, B., Holusova, K., Hu, Y., Luo, M., 5; BS BAC sequencing and assembly:, Salina, E., Ravin, N., Skryabin, K., Beletsky, A., Kadnikov, V., Mardanov, A., Nesterov, M., Rakitin, A., Sergeeva, E., 6; B BAC sequencing and assembly:, Handa, H., Kanamori, H., Katagiri, S., Kobayashi, F., Nasuda, S., Tanaka, T., Wu, J., 7; A physical mapping and BAC sequencing:, Appels, R., Hayden, M., Keeble-Gagnere, G., Rigault, P., Tibbits, J., 7; B physical mapping, BAC sequencing, and assembly:, Olsen, O.-A., Belova, T., Cattonaro, F., Jiumeng, M., Kugler, K., Mayer, K. F. X., Pfeifer, M., Sandve, S., Xun, X., Zhan, B., 7; DS BAC sequencing and assembly:, Simkova, H., Abrouk, M., Batley, J., Bayer, P. E., Edwards, D., Hayashi, S., Toegelova, H., Tulpova, Z., Visendi, P., 7; DL physical mapping and BAC sequencing:, Weining, S., Cui, L., Du, X., Feng, K., Nie, X., Tong, W., Wang, L., Figures:, Borrill, P., Gundlach, H., Galvez, S., Kaithakottil, G., Lang, D., Lux, T., Mascher, M., Ormanbekova, D., Prade, V., Ramirez-Gonzalez, R. H., Spannagl, M., Stein, N., Uauy, C., Venturini, L., Manuscript writing team:, Stein, N., Appels, R., Eversole, K., Rogers, J., Borrill, P., Cattivelli, L., Choulet, F., Hernandez, P., Kanyuka, K., Lang, D., Mascher, M., Nilsen, K., Paux, E., Pozniak, C. J., Ramirez-Gonzalez, R. H., Simkova, H., Small, I., Spannagl, M., Swarbreck, D., Uauy, C.
shingle_author_4 The International Wheat Genome Sequencing Consortium (IWGSC), IWGSC Ref; Seq principal investigators:, Appels, R., Eversole, K., Feuillet, C., Keller, B., Rogers, J., Stein, N., IWGSC whole-genome assembly principal investigators:, Pozniak, C. J., Stein, N., Choulet, F., Distelfeld, A., Eversole, K., Poland, J., Rogers, J., Ronen, G., Sharpe, A. G., Whole-genome sequencing and assembly:, Pozniak, C., Ronen, G., Stein, N., Barad, O., Baruch, K., Choulet, F., Keeble-Gagnere, G., Mascher, M., Sharpe, A. G., Ben-Zvi, G., Josselin, A.-A., Hi-C data-based scaffolding:, Stein, N., Mascher, M., Himmelbach, A., Whole-genome assembly quality control and analyses:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Rogers, J., Balfourier, F., Gutierrez-Gonzalez, J., Hayden, M., Josselin, A.-A., Koh, C., Muehlbauer, G., Pasam, R. K., Paux, E., Pozniak, C. J., Rigault, P., Sharpe, A. G., Tibbits, J., Tiwari, V., Pseudomolecule assembly:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Josselin, A.-A., Rogers, J., Ref; Seq genome structure and gene analyses:, Spannagl, M., Choulet, F., Lang, D., Gundlach, H., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Ormanbekova, D., Paux, E., Prade, V., Simkova, H., Wicker, T., Automated annotation:, Choulet, F., Spannagl, M., Swarbreck, D., Rimbert, H., Felder, M., Guilhot, N., Gundlach, H., Haberer, G., Kaithakottil, G., Keilwagen, J., Lang, D., Leroy, P., Lux, T., Mayer, K. F. X., Twardziok, S., Venturini, L., Manual gene curation:, Appels, R., Rimbert, H., Choulet, F., Juhasz, A., Keeble-Gagnere, G., Subgenome comparative analyses:, Choulet, F., Spannagl, M., Lang, D., Abrouk, M., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Wicker, T., Transposable elements:, Choulet, F., Wicker, T., Gundlach, H., Lang, D., Spannagl, M., Phylogenomic analyses:, Lang, D., Spannagl, M., Appels, R., Fischer, I., Transcriptome analyses and RNA-seq data:, Uauy, C., Borrill, P., Ramirez-Gonzalez, R. H., Appels, R., Arnaud, D., Chalabi, S., Chalhoub, B., Choulet, F., Cory, A., Datla, R., Davey, M. W., Hayden, M., Jacobs, J., Lang, D., Robinson, S. J., Spannagl, M., Steuernagel, B., Tibbits, J., Tiwari, V., van Ex, F., Wulff, B. B. H., Whole-genome methylome:, Pozniak, C. J., Robinson, S. J., Sharpe, A. G., Cory, A., Histone mark analyses:, Benhamed, M., Paux, E., Bendahmane, A., Concia, L., Latrasse, D., BAC chromosome MTP IWGSC-Bayer Whole-Genome Profiling (WGP) tags:, Rogers, J., Jacobs, J., Alaux, M., Appels, R., Bartos, J., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., Letellier, T., Olsen, O.-A., Simkova, H., Singh, K., Valarik, M., van der Vossen, E., Vautrin, S., Weining, S., Chromosome LTC mapping and physical mapping quality control:, Korol, A., Frenkel, Z., Fahima, T., Glikson, V., Raats, D., Rogers, J., RH mapping:, Tiwari, V., Gill, B., Paux, E., Poland, J., Optical mapping:, Dolezel, J., Cihalikova, J., Simkova, H., Toegelova, H., Vrana, J., Recombination analyses:, Sourdille, P., Darrier, B., Gene family analyses:, Appels, R., Spannagl, M., Lang, D., Fischer, I., Ormanbekova, D., Prade, V., CBF gene family:, Barabaschi, D., Cattivelli, L., Dehydrin gene family:, Hernandez, P., Galvez, S., Budak, H., NLR gene family:, Steuernagel, B., Jones, J. D. G., Witek, K., Wulff, B. B. H., Yu, G., PPR gene family:, Small, I., Melonek, J., Zhou, R., Prolamin gene family:, Juhasz, A., Belova, T., Appels, R., Olsen, O.-A., WAK gene family:, Kanyuka, K., King, R., Stem solidness (SSt1) QTL team:, Nilsen, K., Walkowiak, S., Pozniak, C. J., Cuthbert, R., Datla, R., Knox, R., Wiebe, K., Xiang, D., Flowering locus C (FLC) gene team:, Rohde, A., Golds, T., Genome size analysis:, Dolezel, J., Cizkova, J., Tibbits, J., Micro; RNA and t; RNA annotation:, Budak, H., Akpinar, B. A., Biyiklioglu, S., Genetic maps and mapping:, Muehlbauer, G., Poland, J., Gao, L., Gutierrez-Gonzalez, J., NDaiye, A., BAC libraries and chromosome sorting:, Dolezel, J., Simkova, H., Cihalikova, J., Kubalakova, M., Safar, J., Vrana, J., BAC pooling, BAC library repository, and access:, Berges, H., Bellec, A., Vautrin, S., IWGSC sequence and data repository and access:, Alaux, M., Alfama, F., Adam-Blondon, A.-F., Flores, R., Guerche, C., Letellier, T., Loaec, M., Quesneville, H., Physical maps and BAC-based sequences:, 1; A BAC sequencing and assembly:, Pozniak, C. J., Sharpe, A. G., Walkowiak, S., Budak, H., Condie, J., Ens, J., Koh, C., Maclachlan, R., Tan, Y., Wicker, T., 1; B BAC sequencing and assembly:, Choulet, F., Paux, E., Alberti, A., Aury, J.-M., Balfourier, F., Barbe, V., Couloux, A., Cruaud, C., Labadie, K., Mangenot, S., Wincker, P., 1; D, 4; D, and 6; D physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 2; AL physical mapping:, Singh, K., Chhuneja, P., Gupta, O. P., Jindal, S., Kaur, P., Malik, P., Sharma, P., Yadav, B., 2; AS physical mapping:, Singh, N. K., Khurana, J., Chaudhary, C., Khurana, P., Kumar, V., Mahato, A., Mathur, S., Sevanthi, A., Sharma, N., Tomar, R. S., 2; B, 2; D, 4; B, 5; BL, and 5; DL IWGSC-Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers, J., Jacobs, J., Alaux, M., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., van der Vossen, E., Vautrin, S., 3; AL physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 3; DS physical mapping and BAC sequencing and assembly:, Bartos, J., Holusova, K., Plihal, O., 3; DL BAC sequencing and assembly:, Clark, M. D., Heavens, D., Kettleborough, G., Wright, J., 4; A physical mapping, BAC sequencing, assembly, and annotation:, Valarik, M., Abrouk, M., Balcarkova, B., Holusova, K., Hu, Y., Luo, M., 5; BS BAC sequencing and assembly:, Salina, E., Ravin, N., Skryabin, K., Beletsky, A., Kadnikov, V., Mardanov, A., Nesterov, M., Rakitin, A., Sergeeva, E., 6; B BAC sequencing and assembly:, Handa, H., Kanamori, H., Katagiri, S., Kobayashi, F., Nasuda, S., Tanaka, T., Wu, J., 7; A physical mapping and BAC sequencing:, Appels, R., Hayden, M., Keeble-Gagnere, G., Rigault, P., Tibbits, J., 7; B physical mapping, BAC sequencing, and assembly:, Olsen, O.-A., Belova, T., Cattonaro, F., Jiumeng, M., Kugler, K., Mayer, K. F. X., Pfeifer, M., Sandve, S., Xun, X., Zhan, B., 7; DS BAC sequencing and assembly:, Simkova, H., Abrouk, M., Batley, J., Bayer, P. E., Edwards, D., Hayashi, S., Toegelova, H., Tulpova, Z., Visendi, P., 7; DL physical mapping and BAC sequencing:, Weining, S., Cui, L., Du, X., Feng, K., Nie, X., Tong, W., Wang, L., Figures:, Borrill, P., Gundlach, H., Galvez, S., Kaithakottil, G., Lang, D., Lux, T., Mascher, M., Ormanbekova, D., Prade, V., Ramirez-Gonzalez, R. H., Spannagl, M., Stein, N., Uauy, C., Venturini, L., Manuscript writing team:, Stein, N., Appels, R., Eversole, K., Rogers, J., Borrill, P., Cattivelli, L., Choulet, F., Hernandez, P., Kanyuka, K., Lang, D., Mascher, M., Nilsen, K., Paux, E., Pozniak, C. J., Ramirez-Gonzalez, R. H., Simkova, H., Small, I., Spannagl, M., Swarbreck, D., Uauy, C.
shingle_catch_all_1 Shifting the limits in wheat research and breeding using a fully annotated reference genome
Botany, Ecology, Online Only
An annotated reference sequence representing the hexaploid bread wheat genome in 21 pseudomolecules has been analyzed to identify the distribution and genomic context of coding and noncoding elements across the A, B, and D subgenomes. With an estimated coverage of 94% of the genome and containing 107,891 high-confidence gene models, this assembly enabled the discovery of tissue- and developmental stage–related coexpression networks by providing a transcriptome atlas representing major stages of wheat development. Dynamics of complex gene families involved in environmental adaptation and end-use quality were revealed at subgenome resolution and contextualized to known agronomic single-gene or quantitative trait loci. This community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding.
The International Wheat Genome Sequencing Consortium (IWGSC), IWGSC Ref; Seq principal investigators:, Appels, R., Eversole, K., Feuillet, C., Keller, B., Rogers, J., Stein, N., IWGSC whole-genome assembly principal investigators:, Pozniak, C. J., Stein, N., Choulet, F., Distelfeld, A., Eversole, K., Poland, J., Rogers, J., Ronen, G., Sharpe, A. G., Whole-genome sequencing and assembly:, Pozniak, C., Ronen, G., Stein, N., Barad, O., Baruch, K., Choulet, F., Keeble-Gagnere, G., Mascher, M., Sharpe, A. G., Ben-Zvi, G., Josselin, A.-A., Hi-C data-based scaffolding:, Stein, N., Mascher, M., Himmelbach, A., Whole-genome assembly quality control and analyses:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Rogers, J., Balfourier, F., Gutierrez-Gonzalez, J., Hayden, M., Josselin, A.-A., Koh, C., Muehlbauer, G., Pasam, R. K., Paux, E., Pozniak, C. J., Rigault, P., Sharpe, A. G., Tibbits, J., Tiwari, V., Pseudomolecule assembly:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Josselin, A.-A., Rogers, J., Ref; Seq genome structure and gene analyses:, Spannagl, M., Choulet, F., Lang, D., Gundlach, H., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Ormanbekova, D., Paux, E., Prade, V., Simkova, H., Wicker, T., Automated annotation:, Choulet, F., Spannagl, M., Swarbreck, D., Rimbert, H., Felder, M., Guilhot, N., Gundlach, H., Haberer, G., Kaithakottil, G., Keilwagen, J., Lang, D., Leroy, P., Lux, T., Mayer, K. F. X., Twardziok, S., Venturini, L., Manual gene curation:, Appels, R., Rimbert, H., Choulet, F., Juhasz, A., Keeble-Gagnere, G., Subgenome comparative analyses:, Choulet, F., Spannagl, M., Lang, D., Abrouk, M., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Wicker, T., Transposable elements:, Choulet, F., Wicker, T., Gundlach, H., Lang, D., Spannagl, M., Phylogenomic analyses:, Lang, D., Spannagl, M., Appels, R., Fischer, I., Transcriptome analyses and RNA-seq data:, Uauy, C., Borrill, P., Ramirez-Gonzalez, R. H., Appels, R., Arnaud, D., Chalabi, S., Chalhoub, B., Choulet, F., Cory, A., Datla, R., Davey, M. W., Hayden, M., Jacobs, J., Lang, D., Robinson, S. J., Spannagl, M., Steuernagel, B., Tibbits, J., Tiwari, V., van Ex, F., Wulff, B. B. H., Whole-genome methylome:, Pozniak, C. J., Robinson, S. J., Sharpe, A. G., Cory, A., Histone mark analyses:, Benhamed, M., Paux, E., Bendahmane, A., Concia, L., Latrasse, D., BAC chromosome MTP IWGSC-Bayer Whole-Genome Profiling (WGP) tags:, Rogers, J., Jacobs, J., Alaux, M., Appels, R., Bartos, J., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., Letellier, T., Olsen, O.-A., Simkova, H., Singh, K., Valarik, M., van der Vossen, E., Vautrin, S., Weining, S., Chromosome LTC mapping and physical mapping quality control:, Korol, A., Frenkel, Z., Fahima, T., Glikson, V., Raats, D., Rogers, J., RH mapping:, Tiwari, V., Gill, B., Paux, E., Poland, J., Optical mapping:, Dolezel, J., Cihalikova, J., Simkova, H., Toegelova, H., Vrana, J., Recombination analyses:, Sourdille, P., Darrier, B., Gene family analyses:, Appels, R., Spannagl, M., Lang, D., Fischer, I., Ormanbekova, D., Prade, V., CBF gene family:, Barabaschi, D., Cattivelli, L., Dehydrin gene family:, Hernandez, P., Galvez, S., Budak, H., NLR gene family:, Steuernagel, B., Jones, J. D. G., Witek, K., Wulff, B. B. H., Yu, G., PPR gene family:, Small, I., Melonek, J., Zhou, R., Prolamin gene family:, Juhasz, A., Belova, T., Appels, R., Olsen, O.-A., WAK gene family:, Kanyuka, K., King, R., Stem solidness (SSt1) QTL team:, Nilsen, K., Walkowiak, S., Pozniak, C. J., Cuthbert, R., Datla, R., Knox, R., Wiebe, K., Xiang, D., Flowering locus C (FLC) gene team:, Rohde, A., Golds, T., Genome size analysis:, Dolezel, J., Cizkova, J., Tibbits, J., Micro; RNA and t; RNA annotation:, Budak, H., Akpinar, B. A., Biyiklioglu, S., Genetic maps and mapping:, Muehlbauer, G., Poland, J., Gao, L., Gutierrez-Gonzalez, J., NDaiye, A., BAC libraries and chromosome sorting:, Dolezel, J., Simkova, H., Cihalikova, J., Kubalakova, M., Safar, J., Vrana, J., BAC pooling, BAC library repository, and access:, Berges, H., Bellec, A., Vautrin, S., IWGSC sequence and data repository and access:, Alaux, M., Alfama, F., Adam-Blondon, A.-F., Flores, R., Guerche, C., Letellier, T., Loaec, M., Quesneville, H., Physical maps and BAC-based sequences:, 1; A BAC sequencing and assembly:, Pozniak, C. J., Sharpe, A. G., Walkowiak, S., Budak, H., Condie, J., Ens, J., Koh, C., Maclachlan, R., Tan, Y., Wicker, T., 1; B BAC sequencing and assembly:, Choulet, F., Paux, E., Alberti, A., Aury, J.-M., Balfourier, F., Barbe, V., Couloux, A., Cruaud, C., Labadie, K., Mangenot, S., Wincker, P., 1; D, 4; D, and 6; D physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 2; AL physical mapping:, Singh, K., Chhuneja, P., Gupta, O. P., Jindal, S., Kaur, P., Malik, P., Sharma, P., Yadav, B., 2; AS physical mapping:, Singh, N. K., Khurana, J., Chaudhary, C., Khurana, P., Kumar, V., Mahato, A., Mathur, S., Sevanthi, A., Sharma, N., Tomar, R. S., 2; B, 2; D, 4; B, 5; BL, and 5; DL IWGSC-Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers, J., Jacobs, J., Alaux, M., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., van der Vossen, E., Vautrin, S., 3; AL physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 3; DS physical mapping and BAC sequencing and assembly:, Bartos, J., Holusova, K., Plihal, O., 3; DL BAC sequencing and assembly:, Clark, M. D., Heavens, D., Kettleborough, G., Wright, J., 4; A physical mapping, BAC sequencing, assembly, and annotation:, Valarik, M., Abrouk, M., Balcarkova, B., Holusova, K., Hu, Y., Luo, M., 5; BS BAC sequencing and assembly:, Salina, E., Ravin, N., Skryabin, K., Beletsky, A., Kadnikov, V., Mardanov, A., Nesterov, M., Rakitin, A., Sergeeva, E., 6; B BAC sequencing and assembly:, Handa, H., Kanamori, H., Katagiri, S., Kobayashi, F., Nasuda, S., Tanaka, T., Wu, J., 7; A physical mapping and BAC sequencing:, Appels, R., Hayden, M., Keeble-Gagnere, G., Rigault, P., Tibbits, J., 7; B physical mapping, BAC sequencing, and assembly:, Olsen, O.-A., Belova, T., Cattonaro, F., Jiumeng, M., Kugler, K., Mayer, K. F. X., Pfeifer, M., Sandve, S., Xun, X., Zhan, B., 7; DS BAC sequencing and assembly:, Simkova, H., Abrouk, M., Batley, J., Bayer, P. E., Edwards, D., Hayashi, S., Toegelova, H., Tulpova, Z., Visendi, P., 7; DL physical mapping and BAC sequencing:, Weining, S., Cui, L., Du, X., Feng, K., Nie, X., Tong, W., Wang, L., Figures:, Borrill, P., Gundlach, H., Galvez, S., Kaithakottil, G., Lang, D., Lux, T., Mascher, M., Ormanbekova, D., Prade, V., Ramirez-Gonzalez, R. H., Spannagl, M., Stein, N., Uauy, C., Venturini, L., Manuscript writing team:, Stein, N., Appels, R., Eversole, K., Rogers, J., Borrill, P., Cattivelli, L., Choulet, F., Hernandez, P., Kanyuka, K., Lang, D., Mascher, M., Nilsen, K., Paux, E., Pozniak, C. J., Ramirez-Gonzalez, R. H., Simkova, H., Small, I., Spannagl, M., Swarbreck, D., Uauy, C.
American Association for the Advancement of Science (AAAS)
0036-8075
00368075
1095-9203
10959203
shingle_catch_all_2 Shifting the limits in wheat research and breeding using a fully annotated reference genome
Botany, Ecology, Online Only
An annotated reference sequence representing the hexaploid bread wheat genome in 21 pseudomolecules has been analyzed to identify the distribution and genomic context of coding and noncoding elements across the A, B, and D subgenomes. With an estimated coverage of 94% of the genome and containing 107,891 high-confidence gene models, this assembly enabled the discovery of tissue- and developmental stage–related coexpression networks by providing a transcriptome atlas representing major stages of wheat development. Dynamics of complex gene families involved in environmental adaptation and end-use quality were revealed at subgenome resolution and contextualized to known agronomic single-gene or quantitative trait loci. This community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding.
The International Wheat Genome Sequencing Consortium (IWGSC), IWGSC Ref; Seq principal investigators:, Appels, R., Eversole, K., Feuillet, C., Keller, B., Rogers, J., Stein, N., IWGSC whole-genome assembly principal investigators:, Pozniak, C. J., Stein, N., Choulet, F., Distelfeld, A., Eversole, K., Poland, J., Rogers, J., Ronen, G., Sharpe, A. G., Whole-genome sequencing and assembly:, Pozniak, C., Ronen, G., Stein, N., Barad, O., Baruch, K., Choulet, F., Keeble-Gagnere, G., Mascher, M., Sharpe, A. G., Ben-Zvi, G., Josselin, A.-A., Hi-C data-based scaffolding:, Stein, N., Mascher, M., Himmelbach, A., Whole-genome assembly quality control and analyses:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Rogers, J., Balfourier, F., Gutierrez-Gonzalez, J., Hayden, M., Josselin, A.-A., Koh, C., Muehlbauer, G., Pasam, R. K., Paux, E., Pozniak, C. J., Rigault, P., Sharpe, A. G., Tibbits, J., Tiwari, V., Pseudomolecule assembly:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Josselin, A.-A., Rogers, J., Ref; Seq genome structure and gene analyses:, Spannagl, M., Choulet, F., Lang, D., Gundlach, H., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Ormanbekova, D., Paux, E., Prade, V., Simkova, H., Wicker, T., Automated annotation:, Choulet, F., Spannagl, M., Swarbreck, D., Rimbert, H., Felder, M., Guilhot, N., Gundlach, H., Haberer, G., Kaithakottil, G., Keilwagen, J., Lang, D., Leroy, P., Lux, T., Mayer, K. F. X., Twardziok, S., Venturini, L., Manual gene curation:, Appels, R., Rimbert, H., Choulet, F., Juhasz, A., Keeble-Gagnere, G., Subgenome comparative analyses:, Choulet, F., Spannagl, M., Lang, D., Abrouk, M., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Wicker, T., Transposable elements:, Choulet, F., Wicker, T., Gundlach, H., Lang, D., Spannagl, M., Phylogenomic analyses:, Lang, D., Spannagl, M., Appels, R., Fischer, I., Transcriptome analyses and RNA-seq data:, Uauy, C., Borrill, P., Ramirez-Gonzalez, R. H., Appels, R., Arnaud, D., Chalabi, S., Chalhoub, B., Choulet, F., Cory, A., Datla, R., Davey, M. W., Hayden, M., Jacobs, J., Lang, D., Robinson, S. J., Spannagl, M., Steuernagel, B., Tibbits, J., Tiwari, V., van Ex, F., Wulff, B. B. H., Whole-genome methylome:, Pozniak, C. J., Robinson, S. J., Sharpe, A. G., Cory, A., Histone mark analyses:, Benhamed, M., Paux, E., Bendahmane, A., Concia, L., Latrasse, D., BAC chromosome MTP IWGSC-Bayer Whole-Genome Profiling (WGP) tags:, Rogers, J., Jacobs, J., Alaux, M., Appels, R., Bartos, J., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., Letellier, T., Olsen, O.-A., Simkova, H., Singh, K., Valarik, M., van der Vossen, E., Vautrin, S., Weining, S., Chromosome LTC mapping and physical mapping quality control:, Korol, A., Frenkel, Z., Fahima, T., Glikson, V., Raats, D., Rogers, J., RH mapping:, Tiwari, V., Gill, B., Paux, E., Poland, J., Optical mapping:, Dolezel, J., Cihalikova, J., Simkova, H., Toegelova, H., Vrana, J., Recombination analyses:, Sourdille, P., Darrier, B., Gene family analyses:, Appels, R., Spannagl, M., Lang, D., Fischer, I., Ormanbekova, D., Prade, V., CBF gene family:, Barabaschi, D., Cattivelli, L., Dehydrin gene family:, Hernandez, P., Galvez, S., Budak, H., NLR gene family:, Steuernagel, B., Jones, J. D. G., Witek, K., Wulff, B. B. H., Yu, G., PPR gene family:, Small, I., Melonek, J., Zhou, R., Prolamin gene family:, Juhasz, A., Belova, T., Appels, R., Olsen, O.-A., WAK gene family:, Kanyuka, K., King, R., Stem solidness (SSt1) QTL team:, Nilsen, K., Walkowiak, S., Pozniak, C. J., Cuthbert, R., Datla, R., Knox, R., Wiebe, K., Xiang, D., Flowering locus C (FLC) gene team:, Rohde, A., Golds, T., Genome size analysis:, Dolezel, J., Cizkova, J., Tibbits, J., Micro; RNA and t; RNA annotation:, Budak, H., Akpinar, B. A., Biyiklioglu, S., Genetic maps and mapping:, Muehlbauer, G., Poland, J., Gao, L., Gutierrez-Gonzalez, J., NDaiye, A., BAC libraries and chromosome sorting:, Dolezel, J., Simkova, H., Cihalikova, J., Kubalakova, M., Safar, J., Vrana, J., BAC pooling, BAC library repository, and access:, Berges, H., Bellec, A., Vautrin, S., IWGSC sequence and data repository and access:, Alaux, M., Alfama, F., Adam-Blondon, A.-F., Flores, R., Guerche, C., Letellier, T., Loaec, M., Quesneville, H., Physical maps and BAC-based sequences:, 1; A BAC sequencing and assembly:, Pozniak, C. J., Sharpe, A. G., Walkowiak, S., Budak, H., Condie, J., Ens, J., Koh, C., Maclachlan, R., Tan, Y., Wicker, T., 1; B BAC sequencing and assembly:, Choulet, F., Paux, E., Alberti, A., Aury, J.-M., Balfourier, F., Barbe, V., Couloux, A., Cruaud, C., Labadie, K., Mangenot, S., Wincker, P., 1; D, 4; D, and 6; D physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 2; AL physical mapping:, Singh, K., Chhuneja, P., Gupta, O. P., Jindal, S., Kaur, P., Malik, P., Sharma, P., Yadav, B., 2; AS physical mapping:, Singh, N. K., Khurana, J., Chaudhary, C., Khurana, P., Kumar, V., Mahato, A., Mathur, S., Sevanthi, A., Sharma, N., Tomar, R. S., 2; B, 2; D, 4; B, 5; BL, and 5; DL IWGSC-Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers, J., Jacobs, J., Alaux, M., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., van der Vossen, E., Vautrin, S., 3; AL physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 3; DS physical mapping and BAC sequencing and assembly:, Bartos, J., Holusova, K., Plihal, O., 3; DL BAC sequencing and assembly:, Clark, M. D., Heavens, D., Kettleborough, G., Wright, J., 4; A physical mapping, BAC sequencing, assembly, and annotation:, Valarik, M., Abrouk, M., Balcarkova, B., Holusova, K., Hu, Y., Luo, M., 5; BS BAC sequencing and assembly:, Salina, E., Ravin, N., Skryabin, K., Beletsky, A., Kadnikov, V., Mardanov, A., Nesterov, M., Rakitin, A., Sergeeva, E., 6; B BAC sequencing and assembly:, Handa, H., Kanamori, H., Katagiri, S., Kobayashi, F., Nasuda, S., Tanaka, T., Wu, J., 7; A physical mapping and BAC sequencing:, Appels, R., Hayden, M., Keeble-Gagnere, G., Rigault, P., Tibbits, J., 7; B physical mapping, BAC sequencing, and assembly:, Olsen, O.-A., Belova, T., Cattonaro, F., Jiumeng, M., Kugler, K., Mayer, K. F. X., Pfeifer, M., Sandve, S., Xun, X., Zhan, B., 7; DS BAC sequencing and assembly:, Simkova, H., Abrouk, M., Batley, J., Bayer, P. E., Edwards, D., Hayashi, S., Toegelova, H., Tulpova, Z., Visendi, P., 7; DL physical mapping and BAC sequencing:, Weining, S., Cui, L., Du, X., Feng, K., Nie, X., Tong, W., Wang, L., Figures:, Borrill, P., Gundlach, H., Galvez, S., Kaithakottil, G., Lang, D., Lux, T., Mascher, M., Ormanbekova, D., Prade, V., Ramirez-Gonzalez, R. H., Spannagl, M., Stein, N., Uauy, C., Venturini, L., Manuscript writing team:, Stein, N., Appels, R., Eversole, K., Rogers, J., Borrill, P., Cattivelli, L., Choulet, F., Hernandez, P., Kanyuka, K., Lang, D., Mascher, M., Nilsen, K., Paux, E., Pozniak, C. J., Ramirez-Gonzalez, R. H., Simkova, H., Small, I., Spannagl, M., Swarbreck, D., Uauy, C.
American Association for the Advancement of Science (AAAS)
0036-8075
00368075
1095-9203
10959203
shingle_catch_all_3 Shifting the limits in wheat research and breeding using a fully annotated reference genome
Botany, Ecology, Online Only
An annotated reference sequence representing the hexaploid bread wheat genome in 21 pseudomolecules has been analyzed to identify the distribution and genomic context of coding and noncoding elements across the A, B, and D subgenomes. With an estimated coverage of 94% of the genome and containing 107,891 high-confidence gene models, this assembly enabled the discovery of tissue- and developmental stage–related coexpression networks by providing a transcriptome atlas representing major stages of wheat development. Dynamics of complex gene families involved in environmental adaptation and end-use quality were revealed at subgenome resolution and contextualized to known agronomic single-gene or quantitative trait loci. This community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding.
The International Wheat Genome Sequencing Consortium (IWGSC), IWGSC Ref; Seq principal investigators:, Appels, R., Eversole, K., Feuillet, C., Keller, B., Rogers, J., Stein, N., IWGSC whole-genome assembly principal investigators:, Pozniak, C. J., Stein, N., Choulet, F., Distelfeld, A., Eversole, K., Poland, J., Rogers, J., Ronen, G., Sharpe, A. G., Whole-genome sequencing and assembly:, Pozniak, C., Ronen, G., Stein, N., Barad, O., Baruch, K., Choulet, F., Keeble-Gagnere, G., Mascher, M., Sharpe, A. G., Ben-Zvi, G., Josselin, A.-A., Hi-C data-based scaffolding:, Stein, N., Mascher, M., Himmelbach, A., Whole-genome assembly quality control and analyses:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Rogers, J., Balfourier, F., Gutierrez-Gonzalez, J., Hayden, M., Josselin, A.-A., Koh, C., Muehlbauer, G., Pasam, R. K., Paux, E., Pozniak, C. J., Rigault, P., Sharpe, A. G., Tibbits, J., Tiwari, V., Pseudomolecule assembly:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Josselin, A.-A., Rogers, J., Ref; Seq genome structure and gene analyses:, Spannagl, M., Choulet, F., Lang, D., Gundlach, H., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Ormanbekova, D., Paux, E., Prade, V., Simkova, H., Wicker, T., Automated annotation:, Choulet, F., Spannagl, M., Swarbreck, D., Rimbert, H., Felder, M., Guilhot, N., Gundlach, H., Haberer, G., Kaithakottil, G., Keilwagen, J., Lang, D., Leroy, P., Lux, T., Mayer, K. F. X., Twardziok, S., Venturini, L., Manual gene curation:, Appels, R., Rimbert, H., Choulet, F., Juhasz, A., Keeble-Gagnere, G., Subgenome comparative analyses:, Choulet, F., Spannagl, M., Lang, D., Abrouk, M., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Wicker, T., Transposable elements:, Choulet, F., Wicker, T., Gundlach, H., Lang, D., Spannagl, M., Phylogenomic analyses:, Lang, D., Spannagl, M., Appels, R., Fischer, I., Transcriptome analyses and RNA-seq data:, Uauy, C., Borrill, P., Ramirez-Gonzalez, R. H., Appels, R., Arnaud, D., Chalabi, S., Chalhoub, B., Choulet, F., Cory, A., Datla, R., Davey, M. W., Hayden, M., Jacobs, J., Lang, D., Robinson, S. J., Spannagl, M., Steuernagel, B., Tibbits, J., Tiwari, V., van Ex, F., Wulff, B. B. H., Whole-genome methylome:, Pozniak, C. J., Robinson, S. J., Sharpe, A. G., Cory, A., Histone mark analyses:, Benhamed, M., Paux, E., Bendahmane, A., Concia, L., Latrasse, D., BAC chromosome MTP IWGSC-Bayer Whole-Genome Profiling (WGP) tags:, Rogers, J., Jacobs, J., Alaux, M., Appels, R., Bartos, J., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., Letellier, T., Olsen, O.-A., Simkova, H., Singh, K., Valarik, M., van der Vossen, E., Vautrin, S., Weining, S., Chromosome LTC mapping and physical mapping quality control:, Korol, A., Frenkel, Z., Fahima, T., Glikson, V., Raats, D., Rogers, J., RH mapping:, Tiwari, V., Gill, B., Paux, E., Poland, J., Optical mapping:, Dolezel, J., Cihalikova, J., Simkova, H., Toegelova, H., Vrana, J., Recombination analyses:, Sourdille, P., Darrier, B., Gene family analyses:, Appels, R., Spannagl, M., Lang, D., Fischer, I., Ormanbekova, D., Prade, V., CBF gene family:, Barabaschi, D., Cattivelli, L., Dehydrin gene family:, Hernandez, P., Galvez, S., Budak, H., NLR gene family:, Steuernagel, B., Jones, J. D. G., Witek, K., Wulff, B. B. H., Yu, G., PPR gene family:, Small, I., Melonek, J., Zhou, R., Prolamin gene family:, Juhasz, A., Belova, T., Appels, R., Olsen, O.-A., WAK gene family:, Kanyuka, K., King, R., Stem solidness (SSt1) QTL team:, Nilsen, K., Walkowiak, S., Pozniak, C. J., Cuthbert, R., Datla, R., Knox, R., Wiebe, K., Xiang, D., Flowering locus C (FLC) gene team:, Rohde, A., Golds, T., Genome size analysis:, Dolezel, J., Cizkova, J., Tibbits, J., Micro; RNA and t; RNA annotation:, Budak, H., Akpinar, B. A., Biyiklioglu, S., Genetic maps and mapping:, Muehlbauer, G., Poland, J., Gao, L., Gutierrez-Gonzalez, J., NDaiye, A., BAC libraries and chromosome sorting:, Dolezel, J., Simkova, H., Cihalikova, J., Kubalakova, M., Safar, J., Vrana, J., BAC pooling, BAC library repository, and access:, Berges, H., Bellec, A., Vautrin, S., IWGSC sequence and data repository and access:, Alaux, M., Alfama, F., Adam-Blondon, A.-F., Flores, R., Guerche, C., Letellier, T., Loaec, M., Quesneville, H., Physical maps and BAC-based sequences:, 1; A BAC sequencing and assembly:, Pozniak, C. J., Sharpe, A. G., Walkowiak, S., Budak, H., Condie, J., Ens, J., Koh, C., Maclachlan, R., Tan, Y., Wicker, T., 1; B BAC sequencing and assembly:, Choulet, F., Paux, E., Alberti, A., Aury, J.-M., Balfourier, F., Barbe, V., Couloux, A., Cruaud, C., Labadie, K., Mangenot, S., Wincker, P., 1; D, 4; D, and 6; D physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 2; AL physical mapping:, Singh, K., Chhuneja, P., Gupta, O. P., Jindal, S., Kaur, P., Malik, P., Sharma, P., Yadav, B., 2; AS physical mapping:, Singh, N. K., Khurana, J., Chaudhary, C., Khurana, P., Kumar, V., Mahato, A., Mathur, S., Sevanthi, A., Sharma, N., Tomar, R. S., 2; B, 2; D, 4; B, 5; BL, and 5; DL IWGSC-Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers, J., Jacobs, J., Alaux, M., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., van der Vossen, E., Vautrin, S., 3; AL physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 3; DS physical mapping and BAC sequencing and assembly:, Bartos, J., Holusova, K., Plihal, O., 3; DL BAC sequencing and assembly:, Clark, M. D., Heavens, D., Kettleborough, G., Wright, J., 4; A physical mapping, BAC sequencing, assembly, and annotation:, Valarik, M., Abrouk, M., Balcarkova, B., Holusova, K., Hu, Y., Luo, M., 5; BS BAC sequencing and assembly:, Salina, E., Ravin, N., Skryabin, K., Beletsky, A., Kadnikov, V., Mardanov, A., Nesterov, M., Rakitin, A., Sergeeva, E., 6; B BAC sequencing and assembly:, Handa, H., Kanamori, H., Katagiri, S., Kobayashi, F., Nasuda, S., Tanaka, T., Wu, J., 7; A physical mapping and BAC sequencing:, Appels, R., Hayden, M., Keeble-Gagnere, G., Rigault, P., Tibbits, J., 7; B physical mapping, BAC sequencing, and assembly:, Olsen, O.-A., Belova, T., Cattonaro, F., Jiumeng, M., Kugler, K., Mayer, K. F. X., Pfeifer, M., Sandve, S., Xun, X., Zhan, B., 7; DS BAC sequencing and assembly:, Simkova, H., Abrouk, M., Batley, J., Bayer, P. E., Edwards, D., Hayashi, S., Toegelova, H., Tulpova, Z., Visendi, P., 7; DL physical mapping and BAC sequencing:, Weining, S., Cui, L., Du, X., Feng, K., Nie, X., Tong, W., Wang, L., Figures:, Borrill, P., Gundlach, H., Galvez, S., Kaithakottil, G., Lang, D., Lux, T., Mascher, M., Ormanbekova, D., Prade, V., Ramirez-Gonzalez, R. H., Spannagl, M., Stein, N., Uauy, C., Venturini, L., Manuscript writing team:, Stein, N., Appels, R., Eversole, K., Rogers, J., Borrill, P., Cattivelli, L., Choulet, F., Hernandez, P., Kanyuka, K., Lang, D., Mascher, M., Nilsen, K., Paux, E., Pozniak, C. J., Ramirez-Gonzalez, R. H., Simkova, H., Small, I., Spannagl, M., Swarbreck, D., Uauy, C.
American Association for the Advancement of Science (AAAS)
0036-8075
00368075
1095-9203
10959203
shingle_catch_all_4 Shifting the limits in wheat research and breeding using a fully annotated reference genome
Botany, Ecology, Online Only
An annotated reference sequence representing the hexaploid bread wheat genome in 21 pseudomolecules has been analyzed to identify the distribution and genomic context of coding and noncoding elements across the A, B, and D subgenomes. With an estimated coverage of 94% of the genome and containing 107,891 high-confidence gene models, this assembly enabled the discovery of tissue- and developmental stage–related coexpression networks by providing a transcriptome atlas representing major stages of wheat development. Dynamics of complex gene families involved in environmental adaptation and end-use quality were revealed at subgenome resolution and contextualized to known agronomic single-gene or quantitative trait loci. This community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding.
The International Wheat Genome Sequencing Consortium (IWGSC), IWGSC Ref; Seq principal investigators:, Appels, R., Eversole, K., Feuillet, C., Keller, B., Rogers, J., Stein, N., IWGSC whole-genome assembly principal investigators:, Pozniak, C. J., Stein, N., Choulet, F., Distelfeld, A., Eversole, K., Poland, J., Rogers, J., Ronen, G., Sharpe, A. G., Whole-genome sequencing and assembly:, Pozniak, C., Ronen, G., Stein, N., Barad, O., Baruch, K., Choulet, F., Keeble-Gagnere, G., Mascher, M., Sharpe, A. G., Ben-Zvi, G., Josselin, A.-A., Hi-C data-based scaffolding:, Stein, N., Mascher, M., Himmelbach, A., Whole-genome assembly quality control and analyses:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Rogers, J., Balfourier, F., Gutierrez-Gonzalez, J., Hayden, M., Josselin, A.-A., Koh, C., Muehlbauer, G., Pasam, R. K., Paux, E., Pozniak, C. J., Rigault, P., Sharpe, A. G., Tibbits, J., Tiwari, V., Pseudomolecule assembly:, Choulet, F., Keeble-Gagnere, G., Mascher, M., Josselin, A.-A., Rogers, J., Ref; Seq genome structure and gene analyses:, Spannagl, M., Choulet, F., Lang, D., Gundlach, H., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Ormanbekova, D., Paux, E., Prade, V., Simkova, H., Wicker, T., Automated annotation:, Choulet, F., Spannagl, M., Swarbreck, D., Rimbert, H., Felder, M., Guilhot, N., Gundlach, H., Haberer, G., Kaithakottil, G., Keilwagen, J., Lang, D., Leroy, P., Lux, T., Mayer, K. F. X., Twardziok, S., Venturini, L., Manual gene curation:, Appels, R., Rimbert, H., Choulet, F., Juhasz, A., Keeble-Gagnere, G., Subgenome comparative analyses:, Choulet, F., Spannagl, M., Lang, D., Abrouk, M., Haberer, G., Keeble-Gagnere, G., Mayer, K. F. X., Wicker, T., Transposable elements:, Choulet, F., Wicker, T., Gundlach, H., Lang, D., Spannagl, M., Phylogenomic analyses:, Lang, D., Spannagl, M., Appels, R., Fischer, I., Transcriptome analyses and RNA-seq data:, Uauy, C., Borrill, P., Ramirez-Gonzalez, R. H., Appels, R., Arnaud, D., Chalabi, S., Chalhoub, B., Choulet, F., Cory, A., Datla, R., Davey, M. W., Hayden, M., Jacobs, J., Lang, D., Robinson, S. J., Spannagl, M., Steuernagel, B., Tibbits, J., Tiwari, V., van Ex, F., Wulff, B. B. H., Whole-genome methylome:, Pozniak, C. J., Robinson, S. J., Sharpe, A. G., Cory, A., Histone mark analyses:, Benhamed, M., Paux, E., Bendahmane, A., Concia, L., Latrasse, D., BAC chromosome MTP IWGSC-Bayer Whole-Genome Profiling (WGP) tags:, Rogers, J., Jacobs, J., Alaux, M., Appels, R., Bartos, J., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., Letellier, T., Olsen, O.-A., Simkova, H., Singh, K., Valarik, M., van der Vossen, E., Vautrin, S., Weining, S., Chromosome LTC mapping and physical mapping quality control:, Korol, A., Frenkel, Z., Fahima, T., Glikson, V., Raats, D., Rogers, J., RH mapping:, Tiwari, V., Gill, B., Paux, E., Poland, J., Optical mapping:, Dolezel, J., Cihalikova, J., Simkova, H., Toegelova, H., Vrana, J., Recombination analyses:, Sourdille, P., Darrier, B., Gene family analyses:, Appels, R., Spannagl, M., Lang, D., Fischer, I., Ormanbekova, D., Prade, V., CBF gene family:, Barabaschi, D., Cattivelli, L., Dehydrin gene family:, Hernandez, P., Galvez, S., Budak, H., NLR gene family:, Steuernagel, B., Jones, J. D. G., Witek, K., Wulff, B. B. H., Yu, G., PPR gene family:, Small, I., Melonek, J., Zhou, R., Prolamin gene family:, Juhasz, A., Belova, T., Appels, R., Olsen, O.-A., WAK gene family:, Kanyuka, K., King, R., Stem solidness (SSt1) QTL team:, Nilsen, K., Walkowiak, S., Pozniak, C. J., Cuthbert, R., Datla, R., Knox, R., Wiebe, K., Xiang, D., Flowering locus C (FLC) gene team:, Rohde, A., Golds, T., Genome size analysis:, Dolezel, J., Cizkova, J., Tibbits, J., Micro; RNA and t; RNA annotation:, Budak, H., Akpinar, B. A., Biyiklioglu, S., Genetic maps and mapping:, Muehlbauer, G., Poland, J., Gao, L., Gutierrez-Gonzalez, J., NDaiye, A., BAC libraries and chromosome sorting:, Dolezel, J., Simkova, H., Cihalikova, J., Kubalakova, M., Safar, J., Vrana, J., BAC pooling, BAC library repository, and access:, Berges, H., Bellec, A., Vautrin, S., IWGSC sequence and data repository and access:, Alaux, M., Alfama, F., Adam-Blondon, A.-F., Flores, R., Guerche, C., Letellier, T., Loaec, M., Quesneville, H., Physical maps and BAC-based sequences:, 1; A BAC sequencing and assembly:, Pozniak, C. J., Sharpe, A. G., Walkowiak, S., Budak, H., Condie, J., Ens, J., Koh, C., Maclachlan, R., Tan, Y., Wicker, T., 1; B BAC sequencing and assembly:, Choulet, F., Paux, E., Alberti, A., Aury, J.-M., Balfourier, F., Barbe, V., Couloux, A., Cruaud, C., Labadie, K., Mangenot, S., Wincker, P., 1; D, 4; D, and 6; D physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 2; AL physical mapping:, Singh, K., Chhuneja, P., Gupta, O. P., Jindal, S., Kaur, P., Malik, P., Sharma, P., Yadav, B., 2; AS physical mapping:, Singh, N. K., Khurana, J., Chaudhary, C., Khurana, P., Kumar, V., Mahato, A., Mathur, S., Sevanthi, A., Sharma, N., Tomar, R. S., 2; B, 2; D, 4; B, 5; BL, and 5; DL IWGSC-Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers, J., Jacobs, J., Alaux, M., Bellec, A., Berges, H., Dolezel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., van der Vossen, E., Vautrin, S., 3; AL physical mapping:, Gill, B., Kaur, G., Luo, M., Sehgal, S., 3; DS physical mapping and BAC sequencing and assembly:, Bartos, J., Holusova, K., Plihal, O., 3; DL BAC sequencing and assembly:, Clark, M. D., Heavens, D., Kettleborough, G., Wright, J., 4; A physical mapping, BAC sequencing, assembly, and annotation:, Valarik, M., Abrouk, M., Balcarkova, B., Holusova, K., Hu, Y., Luo, M., 5; BS BAC sequencing and assembly:, Salina, E., Ravin, N., Skryabin, K., Beletsky, A., Kadnikov, V., Mardanov, A., Nesterov, M., Rakitin, A., Sergeeva, E., 6; B BAC sequencing and assembly:, Handa, H., Kanamori, H., Katagiri, S., Kobayashi, F., Nasuda, S., Tanaka, T., Wu, J., 7; A physical mapping and BAC sequencing:, Appels, R., Hayden, M., Keeble-Gagnere, G., Rigault, P., Tibbits, J., 7; B physical mapping, BAC sequencing, and assembly:, Olsen, O.-A., Belova, T., Cattonaro, F., Jiumeng, M., Kugler, K., Mayer, K. F. X., Pfeifer, M., Sandve, S., Xun, X., Zhan, B., 7; DS BAC sequencing and assembly:, Simkova, H., Abrouk, M., Batley, J., Bayer, P. E., Edwards, D., Hayashi, S., Toegelova, H., Tulpova, Z., Visendi, P., 7; DL physical mapping and BAC sequencing:, Weining, S., Cui, L., Du, X., Feng, K., Nie, X., Tong, W., Wang, L., Figures:, Borrill, P., Gundlach, H., Galvez, S., Kaithakottil, G., Lang, D., Lux, T., Mascher, M., Ormanbekova, D., Prade, V., Ramirez-Gonzalez, R. H., Spannagl, M., Stein, N., Uauy, C., Venturini, L., Manuscript writing team:, Stein, N., Appels, R., Eversole, K., Rogers, J., Borrill, P., Cattivelli, L., Choulet, F., Hernandez, P., Kanyuka, K., Lang, D., Mascher, M., Nilsen, K., Paux, E., Pozniak, C. J., Ramirez-Gonzalez, R. H., Simkova, H., Small, I., Spannagl, M., Swarbreck, D., Uauy, C.
American Association for the Advancement of Science (AAAS)
0036-8075
00368075
1095-9203
10959203
shingle_title_1 Shifting the limits in wheat research and breeding using a fully annotated reference genome
shingle_title_2 Shifting the limits in wheat research and breeding using a fully annotated reference genome
shingle_title_3 Shifting the limits in wheat research and breeding using a fully annotated reference genome
shingle_title_4 Shifting the limits in wheat research and breeding using a fully annotated reference genome
timestamp 2025-06-30T23:36:29.681Z
titel Shifting the limits in wheat research and breeding using a fully annotated reference genome
titel_suche Shifting the limits in wheat research and breeding using a fully annotated reference genome
topic W
V
TE-TZ
SQ-SU
WW-YZ
TA-TD
U
uid ipn_articles_6320909