Whole Genome Sequence of an Edible and Potential Medicinal Fungus, Cordyceps guangdongensis
| Publication Date: |
2018-06-01
|
|---|---|
| Publisher: |
Genetics Society of America (GSA)
|
| Electronic ISSN: |
2160-1836
|
| Topics: |
Biology
|
| Published by: |
| _version_ | 1836398952401862658 |
|---|---|
| autor | Zhang, C., Deng, W., Yan, W., Li, T. |
| beschreibung | Cordyceps guangdongensis is an edible fungus which was approved as a novel food by the Chinese Ministry of Public Health in 2013. It also has a broad prospect of application in pharmaceutical industries, with many medicinal activities. In this study, the whole genome of C. guangdongensis GD15, a single spore isolate from a wild strain, was sequenced and assembled with Illumina and PacBio sequencing technology. The generated genome is 29.05 Mb in size, comprising nine scaffolds with an average GC content of 57.01%. It is predicted to contain a total of 9150 protein-coding genes. Sequence identification and comparative analysis indicated that the assembled scaffolds contained two complete chromosomes and four single-end chromosomes, showing a high level assembly. Gene annotation revealed a diversity of transposons that could contribute to the genome size and evolution. Besides, approximately 15.57% and 12.01% genes involved in metabolic processes were annotated by KEGG and COG respectively. Genes belonging to CAZymes accounted for 3.15% of the total genes. In addition, 435 transcription factors, involved in various biological processes, were identified. Among the identified transcription factors, the fungal transcription regulatory proteins (18.39%) and fungal-specific transcription factors (19.77%) represented the two largest classes of transcription factors. This genomic resource provided a new insight into better understanding the relevance of phenotypic characters and genetic mechanisms in C. guangdongensis . |
| citation_standardnr | 6272836 |
| datenlieferant | ipn_articles |
| feed_id | 169615 |
| feed_publisher | Genetics Society of America (GSA) |
| feed_publisher_url | http://www.genetics-gsa.org/ |
| insertion_date | 2018-06-01 |
| journaleissn | 2160-1836 |
| publikationsjahr_anzeige | 2018 |
| publikationsjahr_facette | 2018 |
| publikationsjahr_intervall | 7984:2015-2019 |
| publikationsjahr_sort | 2018 |
| publisher | Genetics Society of America (GSA) |
| quelle | G3: Genes, Genomes, Genetics |
| relation | http://www.g3journal.org/cgi/content/short/8/6/1863?rss=1 |
| search_space | articles |
| shingle_author_1 | Zhang, C., Deng, W., Yan, W., Li, T. |
| shingle_author_2 | Zhang, C., Deng, W., Yan, W., Li, T. |
| shingle_author_3 | Zhang, C., Deng, W., Yan, W., Li, T. |
| shingle_author_4 | Zhang, C., Deng, W., Yan, W., Li, T. |
| shingle_catch_all_1 | Whole Genome Sequence of an Edible and Potential Medicinal Fungus, Cordyceps guangdongensis Cordyceps guangdongensis is an edible fungus which was approved as a novel food by the Chinese Ministry of Public Health in 2013. It also has a broad prospect of application in pharmaceutical industries, with many medicinal activities. In this study, the whole genome of C. guangdongensis GD15, a single spore isolate from a wild strain, was sequenced and assembled with Illumina and PacBio sequencing technology. The generated genome is 29.05 Mb in size, comprising nine scaffolds with an average GC content of 57.01%. It is predicted to contain a total of 9150 protein-coding genes. Sequence identification and comparative analysis indicated that the assembled scaffolds contained two complete chromosomes and four single-end chromosomes, showing a high level assembly. Gene annotation revealed a diversity of transposons that could contribute to the genome size and evolution. Besides, approximately 15.57% and 12.01% genes involved in metabolic processes were annotated by KEGG and COG respectively. Genes belonging to CAZymes accounted for 3.15% of the total genes. In addition, 435 transcription factors, involved in various biological processes, were identified. Among the identified transcription factors, the fungal transcription regulatory proteins (18.39%) and fungal-specific transcription factors (19.77%) represented the two largest classes of transcription factors. This genomic resource provided a new insight into better understanding the relevance of phenotypic characters and genetic mechanisms in C. guangdongensis . Zhang, C., Deng, W., Yan, W., Li, T. Genetics Society of America (GSA) 2160-1836 21601836 |
| shingle_catch_all_2 | Whole Genome Sequence of an Edible and Potential Medicinal Fungus, Cordyceps guangdongensis Cordyceps guangdongensis is an edible fungus which was approved as a novel food by the Chinese Ministry of Public Health in 2013. It also has a broad prospect of application in pharmaceutical industries, with many medicinal activities. In this study, the whole genome of C. guangdongensis GD15, a single spore isolate from a wild strain, was sequenced and assembled with Illumina and PacBio sequencing technology. The generated genome is 29.05 Mb in size, comprising nine scaffolds with an average GC content of 57.01%. It is predicted to contain a total of 9150 protein-coding genes. Sequence identification and comparative analysis indicated that the assembled scaffolds contained two complete chromosomes and four single-end chromosomes, showing a high level assembly. Gene annotation revealed a diversity of transposons that could contribute to the genome size and evolution. Besides, approximately 15.57% and 12.01% genes involved in metabolic processes were annotated by KEGG and COG respectively. Genes belonging to CAZymes accounted for 3.15% of the total genes. In addition, 435 transcription factors, involved in various biological processes, were identified. Among the identified transcription factors, the fungal transcription regulatory proteins (18.39%) and fungal-specific transcription factors (19.77%) represented the two largest classes of transcription factors. This genomic resource provided a new insight into better understanding the relevance of phenotypic characters and genetic mechanisms in C. guangdongensis . Zhang, C., Deng, W., Yan, W., Li, T. Genetics Society of America (GSA) 2160-1836 21601836 |
| shingle_catch_all_3 | Whole Genome Sequence of an Edible and Potential Medicinal Fungus, Cordyceps guangdongensis Cordyceps guangdongensis is an edible fungus which was approved as a novel food by the Chinese Ministry of Public Health in 2013. It also has a broad prospect of application in pharmaceutical industries, with many medicinal activities. In this study, the whole genome of C. guangdongensis GD15, a single spore isolate from a wild strain, was sequenced and assembled with Illumina and PacBio sequencing technology. The generated genome is 29.05 Mb in size, comprising nine scaffolds with an average GC content of 57.01%. It is predicted to contain a total of 9150 protein-coding genes. Sequence identification and comparative analysis indicated that the assembled scaffolds contained two complete chromosomes and four single-end chromosomes, showing a high level assembly. Gene annotation revealed a diversity of transposons that could contribute to the genome size and evolution. Besides, approximately 15.57% and 12.01% genes involved in metabolic processes were annotated by KEGG and COG respectively. Genes belonging to CAZymes accounted for 3.15% of the total genes. In addition, 435 transcription factors, involved in various biological processes, were identified. Among the identified transcription factors, the fungal transcription regulatory proteins (18.39%) and fungal-specific transcription factors (19.77%) represented the two largest classes of transcription factors. This genomic resource provided a new insight into better understanding the relevance of phenotypic characters and genetic mechanisms in C. guangdongensis . Zhang, C., Deng, W., Yan, W., Li, T. Genetics Society of America (GSA) 2160-1836 21601836 |
| shingle_catch_all_4 | Whole Genome Sequence of an Edible and Potential Medicinal Fungus, Cordyceps guangdongensis Cordyceps guangdongensis is an edible fungus which was approved as a novel food by the Chinese Ministry of Public Health in 2013. It also has a broad prospect of application in pharmaceutical industries, with many medicinal activities. In this study, the whole genome of C. guangdongensis GD15, a single spore isolate from a wild strain, was sequenced and assembled with Illumina and PacBio sequencing technology. The generated genome is 29.05 Mb in size, comprising nine scaffolds with an average GC content of 57.01%. It is predicted to contain a total of 9150 protein-coding genes. Sequence identification and comparative analysis indicated that the assembled scaffolds contained two complete chromosomes and four single-end chromosomes, showing a high level assembly. Gene annotation revealed a diversity of transposons that could contribute to the genome size and evolution. Besides, approximately 15.57% and 12.01% genes involved in metabolic processes were annotated by KEGG and COG respectively. Genes belonging to CAZymes accounted for 3.15% of the total genes. In addition, 435 transcription factors, involved in various biological processes, were identified. Among the identified transcription factors, the fungal transcription regulatory proteins (18.39%) and fungal-specific transcription factors (19.77%) represented the two largest classes of transcription factors. This genomic resource provided a new insight into better understanding the relevance of phenotypic characters and genetic mechanisms in C. guangdongensis . Zhang, C., Deng, W., Yan, W., Li, T. Genetics Society of America (GSA) 2160-1836 21601836 |
| shingle_title_1 | Whole Genome Sequence of an Edible and Potential Medicinal Fungus, Cordyceps guangdongensis |
| shingle_title_2 | Whole Genome Sequence of an Edible and Potential Medicinal Fungus, Cordyceps guangdongensis |
| shingle_title_3 | Whole Genome Sequence of an Edible and Potential Medicinal Fungus, Cordyceps guangdongensis |
| shingle_title_4 | Whole Genome Sequence of an Edible and Potential Medicinal Fungus, Cordyceps guangdongensis |
| timestamp | 2025-06-30T23:35:15.539Z |
| titel | Whole Genome Sequence of an Edible and Potential Medicinal Fungus, Cordyceps guangdongensis |
| titel_suche | Whole Genome Sequence of an Edible and Potential Medicinal Fungus, Cordyceps guangdongensis |
| topic | W |
| uid | ipn_articles_6272836 |