Search Results - (Author, Cooperation:T. Gojobori)
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1Latest Papers from Table of Contents or Articles in PressG. S. Gavelis ; S. Hayakawa ; R. A. White, 3rd ; T. Gojobori ; C. A. Suttle ; P. J. Keeling ; B. S. Leander
Nature Publishing Group (NPG)
Published 2015Staff ViewPublication Date: 2015-07-02Publisher: Nature Publishing Group (NPG)Print ISSN: 0028-0836Electronic ISSN: 1476-4687Topics: BiologyChemistry and PharmacologyMedicineNatural Sciences in GeneralPhysicsKeywords: Dinoflagellida/*genetics/physiology/*ultrastructure ; Genome, Protozoan/genetics ; Microscopy, Electron, Scanning ; Microscopy, Electron, Transmission ; Mitochondria/metabolism/ultrastructure ; Molecular Sequence Data ; Plastids/metabolism/ultrastructure ; Protozoan Proteins/genetics ; Rhodophyta/genetics ; *SymbiosisPublished by: -
2Articles: DFG German National LicensesOkazaki, Y. ; Furuno, M. ; Kasukawa, T. ; Adachi, J. ; Bono, H. ; Kondo, S. ; Nikaido, I. ; Osato, N. ; Saito, R. ; Suzuki, H. ; Yamanaka, I. ; Kiyosawa, H. ; Yagi, K. ; Tomaru, Y. ; Hasegawa, Y. ; Nogami, A. ; Schönbach, C. ; Gojobori, T. ; Baldarelli, R. ; Hill, D. P. ; Bult, C. ; Hume, D. A. ; Quackenbush, J. ; Schriml, L. M. ; Kanapin, A.
[s.l.] : Macmillian Magazines Ltd.
Published 2002Staff ViewISSN: 1476-4687Source: Nature Archives 1869 - 2009Topics: BiologyChemistry and PharmacologyMedicineNatural Sciences in GeneralPhysicsNotes: [Auszug] Only a small proportion of the mouse genome is transcribed into mature messenger RNA transcripts. There is an international collaborative effort to identify all full-length mRNA transcripts from the mouse, and to ensure that each is represented in a physical collection of clones. Here we report the ...Type of Medium: Electronic ResourceURL: -
3Articles: DFG German National LicensesStaff View
ISSN: 0014-4827Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002Topics: BiologyMedicineType of Medium: Electronic ResourceURL: -
4Articles: DFG German National LicensesStaff View
ISSN: 0014-5793Keywords: Blood coagulation ; Kringle ; Molecular evolution ; Serine proteascSource: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002Topics: BiologyChemistry and PharmacologyPhysicsType of Medium: Electronic ResourceURL: -
5Articles: DFG German National LicensesShimizu, N. ; Okamoto, T. ; Moriyama, E.N. ; Takeuchi, Y. ; Gojobori, T. ; Hoshino, H.
Amsterdam : ElsevierStaff ViewISSN: 0014-5793Keywords: Human immunodeficiency virus ; Immunological diversity ; Nucleotide substitutionSource: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002Topics: BiologyChemistry and PharmacologyPhysicsType of Medium: Electronic ResourceURL: -
6Articles: DFG German National LicensesTateno, Y. ; Ikeo, K. ; Imanishi, T. ; Watanabe, H. ; Endo, T. ; Yamaguchi, Y. ; Suzuki, Y. ; Takahashi, K. ; Tsunoyama, K. ; Kawai, M. ; Kawanishi, Y. ; Naitou, K. ; Gojobori, T.
Springer
Published 1997Staff ViewISSN: 1432-1432Keywords: Key words: Evolutionary motif — Motif length — Multiple alignment — Window analysisSource: Springer Online Journal Archives 1860-2000Topics: BiologyNotes: Abstract. We developed a method for multiple alignment of protein sequences. The main feature of this method is that it takes the evolutionary relationships of the proteins in question into account repeatedly for execution, until the relationships and alignment results are in agreement. We then applied this method to the data of the international DNA sequence databases, which are the most comprehensive and updated DNA databases in the world, in order to estimate the ``evolutionary motif'' by extensive use of a supercomputer. Though a few problems needed to be solved, we could estimate the length of the motifs in the range of 20 to 200 amino acids, with about 60 the most frequent length. We then discussed their biological and structural significance. We believe that we are now in a position to analyze DNA and protein not only in vivo and in vitro but also in silico.Type of Medium: Electronic ResourceURL: -
7Articles: DFG German National LicensesStaff View
ISSN: 0014-5793Keywords: HTLV-I HLTV-II pX gene x-lor gene Interleukin 3 Sequence homologySource: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002Topics: BiologyChemistry and PharmacologyPhysicsType of Medium: Electronic ResourceURL: -
8Articles: DFG German National LicensesRobertson, B. ; Myers, G. ; Howard, C. ; Brettin, T. ; Bukh, J. ; Gaschen, B. ; Gojobori, T. ; Maertens, G. ; Mizokami, M. ; Nainan, O. ; Netesov, S. ; Nishioka, K. ; Shin-i, T. ; Simmonds, P. ; Smith, D. ; Stuyver, L. ; Weiner, A.
Springer
Published 1998Staff ViewISSN: 1432-8798Source: Springer Online Journal Archives 1860-2000Topics: MedicineNotes: Summary. This paper presents a summary of the recommendations that were formulated for the purposes of unifying the nomenclature for hepatitis C virus (HCV), based upon guidelines of the International Committee on Virus Taxonomy (ICTV), and provides guidelines of the incorporation of sequence data into an HCV database that will be available to researchers through the internet. Based upon the available data, the genus Hepacivirus should be regarded as comprising as comprising a single species with HCV-1 as the prototype. All currently known isolates of HCV can be divided into six phylogenetically distinct groups, and we recommend that these groups are described as clades 1 to 6. Whether or not these should be regarded as different species within the Hepacivirus genus requires additional clinical, virological, and immunological information. Clades 1, 2, 4, and 5 would correspond to genotype 1, 2, 4, and 5 while clade 3 would comprise genotype 3 and genotype 10, and clade 6 comprise genotypes 6, 7, 8, 9, and 11. We propose that existing subtype designations are reassigned within these clades based upon publication priority, the existence of a complete genome sequence and prevalence. The assignment of isolates to new clades and subtypes should be confined to isolates characterized from epidemiologically unlinked individuals. Comparisons should be based on nucleotide sequence of at least two coding regions and preferably of complete genome sequences, and should be based on phylogenetic analysis rather than percent identity. A forum for discussion and contributions to these recommendations will be made available at the international HCV database at http://s2as02.genes.nig.ac.jp.Type of Medium: Electronic ResourceURL: -
9Articles: DFG German National LicensesTaniguchi, Y. ; Katsumata, Y. ; Koido, S. ; Suemizu, H. ; Yoshimura, S. ; Moriuchi, T. ; Okumura, K. ; Kagotani, K. ; Taguchi, H. ; Imanishi, T. ; Gojobori, T. ; Inoko, H.
Springer
Published 1996Staff ViewISSN: 1432-1777Source: Springer Online Journal Archives 1860-2000Topics: BiologyMedicineNotes: Abstract. We have characterized a human genomic clone carrying two pseudogenes for the proliferating cell nuclear antigen (PCNA), which were tandemly arranged on human Chromosome (Chr) 4. One is a processed pseudogene that showed a 73% nucleotide homology to the human PCNA cDNA and possessed none of the introns existing in the functional PCNA gene. This pseudogene presumably arose by reverse transcription of a PCNA mRNA followed by integration of the cDNA into the genome. The other is a 5′ and 3′ truncated pseudogene that showed a nucleotide homology to a 3′ region of the exon 4 and to a 5′ region of the exon 5 of the PCNA gene and did not have the intronic sequence between the exons 4 and 5. Both pseudogenes had the same nucleotide deletion as compared with the human functional PCNA gene. A phylogenetic analysis of PCNA gene family, including the functional PCNA gene and another PCNA pseudogene located on a different chromosome, revealed that the truncated pseudogene exhibits the closest evolutionary relationship with the processed pseudogene, suggesting that the truncated pseudogene was generated by duplication of the processed pseudogene after translocation to Chr 4. Furthermore, fluorescence in situ hybridization revealed that these pseudogenes are located on the long arm of Chr 4, 4q24.Type of Medium: Electronic ResourceURL: