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1Latest Papers from Table of Contents or Articles in PressJ. A. Banks ; T. Nishiyama ; M. Hasebe ; J. L. Bowman ; M. Gribskov ; C. dePamphilis ; V. A. Albert ; N. Aono ; T. Aoyama ; B. A. Ambrose ; N. W. Ashton ; M. J. Axtell ; E. Barker ; M. S. Barker ; J. L. Bennetzen ; N. D. Bonawitz ; C. Chapple ; C. Cheng ; L. G. Correa ; M. Dacre ; J. DeBarry ; I. Dreyer ; M. Elias ; E. M. Engstrom ; M. Estelle ; L. Feng ; C. Finet ; S. K. Floyd ; W. B. Frommer ; T. Fujita ; L. Gramzow ; M. Gutensohn ; J. Harholt ; M. Hattori ; A. Heyl ; T. Hirai ; Y. Hiwatashi ; M. Ishikawa ; M. Iwata ; K. G. Karol ; B. Koehler ; U. Kolukisaoglu ; M. Kubo ; T. Kurata ; S. Lalonde ; K. Li ; Y. Li ; A. Litt ; E. Lyons ; G. Manning ; T. Maruyama ; T. P. Michael ; K. Mikami ; S. Miyazaki ; S. Morinaga ; T. Murata ; B. Mueller-Roeber ; D. R. Nelson ; M. Obara ; Y. Oguri ; R. G. Olmstead ; N. Onodera ; B. L. Petersen ; B. Pils ; M. Prigge ; S. A. Rensing ; D. M. Riano-Pachon ; A. W. Roberts ; Y. Sato ; H. V. Scheller ; B. Schulz ; C. Schulz ; E. V. Shakirov ; N. Shibagaki ; N. Shinohara ; D. E. Shippen ; I. Sorensen ; R. Sotooka ; N. Sugimoto ; M. Sugita ; N. Sumikawa ; M. Tanurdzic ; G. Theissen ; P. Ulvskov ; S. Wakazuki ; J. K. Weng ; W. W. Willats ; D. Wipf ; P. G. Wolf ; L. Yang ; A. D. Zimmer ; Q. Zhu ; T. Mitros ; U. Hellsten ; D. Loque ; R. Otillar ; A. Salamov ; J. Schmutz ; H. Shapiro ; E. Lindquist ; S. Lucas ; D. Rokhsar ; I. V. Grigoriev
American Association for the Advancement of Science (AAAS)
Published 2011Staff ViewPublication Date: 2011-05-10Publisher: American Association for the Advancement of Science (AAAS)Print ISSN: 0036-8075Electronic ISSN: 1095-9203Topics: BiologyChemistry and PharmacologyComputer ScienceMedicineNatural Sciences in GeneralPhysicsKeywords: Angiosperms/chemistry/genetics ; *Biological Evolution ; Bryopsida/genetics ; Chlamydomonas/chemistry/genetics ; DNA Transposable Elements ; Evolution, Molecular ; Gene Expression Regulation, Plant ; Genes, Plant ; *Genome, Plant ; MicroRNAs/genetics ; Molecular Sequence Data ; Phylogeny ; Plant Proteins/genetics/metabolism ; Proteome/analysis ; RNA Editing ; RNA, Plant/genetics ; Repetitive Sequences, Nucleic Acid ; Selaginellaceae/*genetics/growth & development/metabolism ; Sequence Analysis, DNAPublished by: -
2Articles: DFG German National LicensesStaff View
ISSN: 1432-2145Keywords: Self-incompatibility ; Breeding systems ; Population structureSource: Springer Online Journal Archives 1860-2000Topics: BiologyNotes: Summary The evolutionary significance of self-incompatibility (SI) traditionally has been linked to reduced inbreeding through enforced outcrossing. This view is founded on the premise that outcrossing reduces inbreeding. It is important, when considering the evolutionary significance of any genetic system, to try to distinguish those factors related to the evolution of, from those related to the maintenance of, the system in question. Three factors are considered important for the maintenance of SI: (1) phylogenetic constraint in species descended from SI ancestors, (2) reduced inbreeding in populations, and (3) fitness benefits to individuals resulting from the avoidance of selfing. I suggest that the first two factors should be rejected when considering the origin of SI (whether one or more origins are hypothesized) and that the increase in individual fitness resulting from the avoidance of self-fertilization among individuals that are heterozygous for deleterious alleles may be sufficient to account for the origin of SI. Self-fertilization in plants (except in species that predominantly self-fertilize) generally results in a reduction in fitness of some individuals due to the increased expression of deleterious or lethal recessive alleles, regardless of the degree of inbreeding in the population or the frequency of the allele in question. Inbreeding is a consequence of population structure in many outcrossing plant species. Complex (multi-locus and multi-allelic) systems of SI exist that reduce inbreeding. However, it is argued that these are derived either from simpler systems of SI that may have very little or no effect on inbreeding, in which case any effect on level of inbreeding is secondary, or are not true self-incompatibility systems and are part of a regulatory system that serves to balance the level of inbreeding and outbreeding. Multi-locus and multi-allelic systems of SI and heteromorphic systems of SI are discussed in terms of derived versus ancestral characteristics. A reassessment of the role of breeding systems in the development of a population structure promoting inbreeding is suggested, which may have been of crucial importance in the success and diversification of angiosperms.Type of Medium: Electronic ResourceURL: -
3Articles: DFG German National LicensesStaff View
ISSN: 1617-4623Keywords: Inverted repeat ; Large single copy region ; Chloroplast DNA ; Gene conversion ; Double-stranded DNA breakSource: Springer Online Journal Archives 1860-2000Topics: BiologyNotes: Abstract The endpoints of the large inverted repeat (IR) of chloroplast DNA in flowering plants differ by small amounts between species. To quantify the extent of this movement and define a possible mechanism for IR expansion, DNA sequences across the IR—large single-copy (IR-LSC) junctions were compared among 13Nicotiana species and other dicots. In mostNicotiana species the IR terminates just upstream of, or somewhere within, the 5′ portion of therps19 gene. The truncated copy of this gene,rps19′, varies in length even between closely related species but is of constant size within a single species. InNicotiana, six differentrps19′ structures were found. A phylogenetic tree ofNicotiana species based on restriction site data shows that the IR has both expanded and contracted during the evolution of this genus. Gene conversion is proposed to account for these small and apparently random IR expansions. A large IR expansion of over 12 kb has occurred inNicotiana acuminata. The new IR-LSC junction in this species lies within intron 1 of theclpP gene. This rearrangement occurred via a double-strand DNA break and recombination between poly (A) tracts inclpP intron 1 and upstream ofrps19. Nicotiana acuminata chloroplast DNA contains a ‘molecular fossil’ of the IR-LSC junction that existed prior to this dramatic rearrangement.Type of Medium: Electronic ResourceURL: