ILSE | Search Results - (Author, Cooperation:J. R. Ecker)

1

Global epigenomic reconfiguration during mammalian brain development

R. Lister ; E. A. Mukamel ; J. R. Nery ; M. Urich ; C. A. Puddifoot ; N. D. Johnson ; J. Lucero ; Y. Huang ; A. J. Dwork ; M. D. Schultz ; M. Yu ; J. Tonti-Filippini ; H. Heyn ; S. Hu ; J. C. Wu ; A. Rao ; M. Esteller ; C. He ; F. G. Haghighi ; T. J. Sejnowski ; M. M. Behrens ; J. R. Ecker
American Association for the Advancement of Science (AAAS)
Published 2013

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Publication Date:	2013-07-06
Publisher:	American Association for the Advancement of Science (AAAS)
Print ISSN:	0036-8075
Electronic ISSN:	1095-9203
Topics:	Biology Chemistry and Pharmacology Computer Science Medicine Natural Sciences in General Physics
Keywords:	5-Methylcytosine/metabolism ; Adult ; Animals ; Base Sequence ; Conserved Sequence ; Cytosine/analogs & derivatives/metabolism ; DNA Methylation ; Epigenesis, Genetic ; Epigenomics ; Frontal Lobe/growth & development ; *Gene Expression Regulation, Developmental ; Genome-Wide Association Study ; Humans ; Longevity ; Mice ; Mice, Inbred C57BL ; X Chromosome Inactivation/genetics
Published by:	http://www.aaas.org/

Latest Papers from Table of Contents or Articles in Press

2

Patterns of population epigenomic diversity

R. J. Schmitz ; M. D. Schultz ; M. A. Urich ; J. R. Nery ; M. Pelizzola ; O. Libiger ; A. Alix ; R. B. McCosh ; H. Chen ; N. J. Schork ; J. R. Ecker
Nature Publishing Group (NPG)
Published 2013

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Publication Date:	2013-03-08
Publisher:	Nature Publishing Group (NPG)
Print ISSN:	0028-0836
Electronic ISSN:	1476-4687
Topics:	Biology Chemistry and Pharmacology Medicine Natural Sciences in General Physics
Keywords:	Arabidopsis/genetics ; DNA Methylation/genetics ; DNA Transposable Elements/genetics ; Epigenesis, Genetic/genetics ; Epigenomics ; Genetic Variation/genetics ; Genome, Plant/genetics ; Linkage Disequilibrium/genetics ; Pollen/genetics ; Polymorphism, Genetic/genetics ; Quantitative Trait Loci ; RNA, Messenger/analysis/genetics ; RNA, Plant/genetics ; Seeds/genetics
Published by:	http://www.nature.com/

Latest Papers from Table of Contents or Articles in Press

3

Epigenetics. Exceptional epigenetics in the brain

C. Luo ; J. R. Ecker
American Association for the Advancement of Science (AAAS)
Published 2015

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Publication Date:	2015-06-06
Publisher:	American Association for the Advancement of Science (AAAS)
Print ISSN:	0036-8075
Electronic ISSN:	1095-9203
Topics:	Biology Chemistry and Pharmacology Computer Science Medicine Natural Sciences in General Physics
Keywords:	Animals ; DNA Methylation/genetics ; Female ; Humans ; Male ; Methyl-CpG-Binding Protein 2/genetics/metabolism ; Mutation/genetics ; Rett Syndrome/*genetics
Published by:	http://www.aaas.org/

Latest Papers from Table of Contents or Articles in Press

4

Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

R. Lister ; M. Pelizzola ; Y. S. Kida ; R. D. Hawkins ; J. R. Nery ; G. Hon ; J. Antosiewicz-Bourget ; R. O'Malley ; R. Castanon ; S. Klugman ; M. Downes ; R. Yu ; R. Stewart ; B. Ren ; J. A. Thomson ; R. M. Evans ; J. R. Ecker
Nature Publishing Group (NPG)
Published 2011

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Publication Date:	2011-02-04
Publisher:	Nature Publishing Group (NPG)
Print ISSN:	0028-0836
Electronic ISSN:	1476-4687
Topics:	Biology Chemistry and Pharmacology Medicine Natural Sciences in General Physics
Keywords:	Cell Differentiation/genetics ; Cell Line ; Cellular Reprogramming/genetics ; CpG Islands/genetics ; DNA Methylation/genetics ; Embryonic Stem Cells/cytology/metabolism ; Epigenomics ; Epistasis, Genetic/genetics ; Fibroblasts/cytology/metabolism ; Genome, Human/genetics ; Histones/metabolism ; Humans ; Induced Pluripotent Stem Cells/cytology/*metabolism ; Trophoblasts/cytology/metabolism
Published by:	http://www.nature.com/

Latest Papers from Table of Contents or Articles in Press

5

Human body epigenome maps reveal noncanonical DNA methylation variation

M. D. Schultz ; Y. He ; J. W. Whitaker ; M. Hariharan ; E. A. Mukamel ; D. Leung ; N. Rajagopal ; J. R. Nery ; M. A. Urich ; H. Chen ; S. Lin ; Y. Lin ; I. Jung ; A. D. Schmitt ; S. Selvaraj ; B. Ren ; T. J. Sejnowski ; W. Wang ; J. R. Ecker
Nature Publishing Group (NPG)
Published 2015

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Publication Date:	2015-06-02
Publisher:	Nature Publishing Group (NPG)
Print ISSN:	0028-0836
Electronic ISSN:	1476-4687
Topics:	Biology Chemistry and Pharmacology Medicine Natural Sciences in General Physics
Keywords:	Age Factors ; Alleles ; Chromosome Mapping ; DNA Methylation ; Epigenesis, Genetic ; Female ; Gene Expression Profiling ; Gene Expression Regulation ; Genetic Variation ; Humans ; Male ; Organ Specificity
Published by:	http://www.nature.com/

Latest Papers from Table of Contents or Articles in Press

6

Chromatin architecture reorganization during stem cell differentiation

J. R. Dixon ; I. Jung ; S. Selvaraj ; Y. Shen ; J. E. Antosiewicz-Bourget ; A. Y. Lee ; Z. Ye ; A. Kim ; N. Rajagopal ; W. Xie ; Y. Diao ; J. Liang ; H. Zhao ; V. V. Lobanenkov ; J. R. Ecker ; J. A. Thomson ; B. Ren
Nature Publishing Group (NPG)
Published 2015

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Publication Date:	2015-02-20
Publisher:	Nature Publishing Group (NPG)
Print ISSN:	0028-0836
Electronic ISSN:	1476-4687
Topics:	Biology Chemistry and Pharmacology Medicine Natural Sciences in General Physics
Keywords:	Alleles ; Allelic Imbalance/genetics ; Cell Differentiation/genetics ; Cell Lineage/genetics ; Chromatin/chemistry/genetics/metabolism ; Chromatin Assembly and Disassembly/genetics ; Embryonic Stem Cells/cytology/metabolism ; Enhancer Elements, Genetic/genetics ; Epigenesis, Genetic/*genetics ; Epigenomics ; Gene Regulatory Networks ; Humans ; Promoter Regions, Genetic/genetics ; Reproducibility of Results
Published by:	http://www.nature.com/

Latest Papers from Table of Contents or Articles in Press

7

Independently evolved virulence effectors converge onto hubs in a plant immune system network

M. S. Mukhtar ; A. R. Carvunis ; M. Dreze ; P. Epple ; J. Steinbrenner ; J. Moore ; M. Tasan ; M. Galli ; T. Hao ; M. T. Nishimura ; S. J. Pevzner ; S. E. Donovan ; L. Ghamsari ; B. Santhanam ; V. Romero ; M. M. Poulin ; F. Gebreab ; B. J. Gutierrez ; S. Tam ; D. Monachello ; M. Boxem ; C. J. Harbort ; N. McDonald ; L. Gai ; H. Chen ; Y. He ; J. Vandenhaute ; F. P. Roth ; D. E. Hill ; J. R. Ecker ; M. Vidal ; J. Beynon ; P. Braun ; J. L. Dangl
American Association for the Advancement of Science (AAAS)
Published 2011

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Publication Date:	2011-07-30
Publisher:	American Association for the Advancement of Science (AAAS)
Print ISSN:	0036-8075
Electronic ISSN:	1095-9203
Topics:	Biology Chemistry and Pharmacology Computer Science Medicine Natural Sciences in General Physics
Keywords:	Arabidopsis/genetics/immunology/metabolism/microbiology ; Bacterial Proteins/metabolism ; Evolution, Molecular ; Genes, Plant ; Host-Pathogen Interactions ; Immunity, Innate ; Oomycetes/pathogenicity ; Plant Diseases/immunology ; Plant Immunity ; Protein Interaction Mapping ; Pseudomonas syringae/pathogenicity ; Receptors, Immunologic/metabolism ; Virulence Factors/*metabolism
Published by:	http://www.aaas.org/

Latest Papers from Table of Contents or Articles in Press

8

Transgenerational epigenetic instability is a source of novel methylation variants

R. J. Schmitz ; M. D. Schultz ; M. G. Lewsey ; R. C. O'Malley ; M. A. Urich ; O. Libiger ; N. J. Schork ; J. R. Ecker
American Association for the Advancement of Science (AAAS)
Published 2011

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Publication Date:	2011-09-17
Publisher:	American Association for the Advancement of Science (AAAS)
Print ISSN:	0036-8075
Electronic ISSN:	1095-9203
Topics:	Biology Chemistry and Pharmacology Computer Science Medicine Natural Sciences in General Physics
Keywords:	Alleles ; Arabidopsis/genetics/metabolism ; DNA Methylation ; DNA Transposable Elements ; DNA, Intergenic ; DNA, Plant/genetics/metabolism ; Dinucleoside Phosphates/metabolism ; *Epigenesis, Genetic ; Genes, Plant ; Genetic Variation ; Genome, Plant ; Linear Models ; Mutation ; Polymorphism, Genetic ; Promoter Regions, Genetic ; Transcription, Genetic
Published by:	http://www.aaas.org/

Latest Papers from Table of Contents or Articles in Press

9

Abnormalities in human pluripotent cells due to reprogramming mechanisms

H. Ma ; R. Morey ; R. C. O'Neil ; Y. He ; B. Daughtry ; M. D. Schultz ; M. Hariharan ; J. R. Nery ; R. Castanon ; K. Sabatini ; R. D. Thiagarajan ; M. Tachibana ; E. Kang ; R. Tippner-Hedges ; R. Ahmed ; N. M. Gutierrez ; C. Van Dyken ; A. Polat ; A. Sugawara ; M. Sparman ; S. Gokhale ; P. Amato ; D. P. Wolf ; J. R. Ecker ; L. C. Laurent ; S. Mitalipov
Nature Publishing Group (NPG)
Published 2014

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Publication Date:	2014-07-11
Publisher:	Nature Publishing Group (NPG)
Print ISSN:	0028-0836
Electronic ISSN:	1476-4687
Topics:	Biology Chemistry and Pharmacology Medicine Natural Sciences in General Physics
Keywords:	Animals ; Cell Line ; Cellular Reprogramming ; Chromosome Aberrations ; Chromosomes, Human, X/genetics/metabolism ; DNA Copy Number Variations ; DNA Methylation ; Genome-Wide Association Study ; Genomic Imprinting ; Humans ; Nuclear Transfer Techniques/standards ; Pluripotent Stem Cells/cytology/metabolism ; Transcriptome
Published by:	http://www.nature.com/

Latest Papers from Table of Contents or Articles in Press

10

Integrative analysis of haplotype-resolved epigenomes across human tissues

D. Leung ; I. Jung ; N. Rajagopal ; A. Schmitt ; S. Selvaraj ; A. Y. Lee ; C. A. Yen ; S. Lin ; Y. Lin ; Y. Qiu ; W. Xie ; F. Yue ; M. Hariharan ; P. Ray ; S. Kuan ; L. Edsall ; H. Yang ; N. C. Chi ; M. Q. Zhang ; J. R. Ecker ; B. Ren
Nature Publishing Group (NPG)
Published 2015

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Publication Date:	2015-02-20
Publisher:	Nature Publishing Group (NPG)
Print ISSN:	0028-0836
Electronic ISSN:	1476-4687
Topics:	Biology Chemistry and Pharmacology Medicine Natural Sciences in General Physics
Keywords:	Acetylation ; Alleles ; Chromatin/genetics/metabolism ; Chromosomes, Human/genetics ; Datasets as Topic ; Enhancer Elements, Genetic/genetics ; Epigenesis, Genetic/genetics ; Epigenomics ; Genetic Variation/genetics ; Haplotypes/genetics ; Histones/metabolism ; Humans ; Nucleotide Motifs ; Organ Specificity/genetics ; Transcription, Genetic/genetics
Published by:	http://www.nature.com/

Latest Papers from Table of Contents or Articles in Press

11

An alternative pluripotent state confers interspecies chimaeric competency

J. Wu ; D. Okamura ; M. Li ; K. Suzuki ; C. Luo ; L. Ma ; Y. He ; Z. Li ; C. Benner ; I. Tamura ; M. N. Krause ; J. R. Nery ; T. Du ; Z. Zhang ; T. Hishida ; Y. Takahashi ; E. Aizawa ; N. Y. Kim ; J. Lajara ; P. Guillen ; J. M. Campistol ; C. R. Esteban ; P. J. Ross ; A. Saghatelian ; B. Ren ; J. R. Ecker ; J. C. Izpisua Belmonte
Nature Publishing Group (NPG)
Published 2015

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Publication Date:	2015-05-07
Publisher:	Nature Publishing Group (NPG)
Print ISSN:	0028-0836
Electronic ISSN:	1476-4687
Topics:	Biology Chemistry and Pharmacology Medicine Natural Sciences in General Physics
Keywords:	Animals ; Cell Culture Techniques/methods ; Cell Line ; Chimera ; Embryonic Stem Cells/cytology ; Female ; Germ Layers/cytology ; Humans ; Induced Pluripotent Stem Cells/cytology ; Male ; Mice ; Pan troglodytes ; Pluripotent Stem Cells/cytology/metabolism ; Regenerative Medicine ; Species Specificity
Published by:	http://www.nature.com/

Latest Papers from Table of Contents or Articles in Press

12

Integrative analysis of 111 reference human epigenomes

A. Kundaje ; W. Meuleman ; J. Ernst ; M. Bilenky ; A. Yen ; A. Heravi-Moussavi ; P. Kheradpour ; Z. Zhang ; J. Wang ; M. J. Ziller ; V. Amin ; J. W. Whitaker ; M. D. Schultz ; L. D. Ward ; A. Sarkar ; G. Quon ; R. S. Sandstrom ; M. L. Eaton ; Y. C. Wu ; A. R. Pfenning ; X. Wang ; M. Claussnitzer ; Y. Liu ; C. Coarfa ; R. A. Harris ; N. Shoresh ; C. B. Epstein ; E. Gjoneska ; D. Leung ; W. Xie ; R. D. Hawkins ; R. Lister ; C. Hong ; P. Gascard ; A. J. Mungall ; R. Moore ; E. Chuah ; A. Tam ; T. K. Canfield ; R. S. Hansen ; R. Kaul ; P. J. Sabo ; M. S. Bansal ; A. Carles ; J. R. Dixon ; K. H. Farh ; S. Feizi ; R. Karlic ; A. R. Kim ; A. Kulkarni ; D. Li ; R. Lowdon ; G. Elliott ; T. R. Mercer ; S. J. Neph ; V. Onuchic ; P. Polak ; N. Rajagopal ; P. Ray ; R. C. Sallari ; K. T. Siebenthall ; N. A. Sinnott-Armstrong ; M. Stevens ; R. E. Thurman ; J. Wu ; B. Zhang ; X. Zhou ; A. E. Beaudet ; L. A. Boyer ; P. L. De Jager ; P. J. Farnham ; S. J. Fisher ; D. Haussler ; S. J. Jones ; W. Li ; M. A. Marra ; M. T. McManus ; S. Sunyaev ; J. A. Thomson ; T. D. Tlsty ; L. H. Tsai ; W. Wang ; R. A. Waterland ; M. Q. Zhang ; L. H. Chadwick ; B. E. Bernstein ; J. F. Costello ; J. R. Ecker ; M. Hirst ; A. Meissner ; A. Milosavljevic ; B. Ren ; J. A. Stamatoyannopoulos ; T. Wang ; M. Kellis
Nature Publishing Group (NPG)
Published 2015

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Publication Date:	2015-02-20
Publisher:	Nature Publishing Group (NPG)
Print ISSN:	0028-0836
Electronic ISSN:	1476-4687
Topics:	Biology Chemistry and Pharmacology Medicine Natural Sciences in General Physics
Keywords:	Base Sequence ; Cell Lineage/genetics ; Cells, Cultured ; Chromatin/chemistry/genetics/metabolism ; Chromosomes, Human/chemistry/genetics/metabolism ; DNA/chemistry/genetics/metabolism ; DNA Methylation ; Datasets as Topic ; Enhancer Elements, Genetic/genetics ; Epigenesis, Genetic/genetics ; Epigenomics ; Genetic Variation/genetics ; Genome, Human/*genetics ; Genome-Wide Association Study ; Histones/metabolism ; Humans ; Organ Specificity/genetics ; RNA/genetics ; Reference Values
Published by:	http://www.nature.com/

Latest Papers from Table of Contents or Articles in Press

13

Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation

M. D. Schultz ; Y. He ; J. W. Whitaker ; M. Hariharan ; E. A. Mukamel ; D. Leung ; N. Rajagopal ; J. R. Nery ; M. A. Urich ; H. Chen ; S. Lin ; Y. Lin ; I. Jung ; A. D. Schmitt ; S. Selvaraj ; B. Ren ; T. J. Sejnowski ; W. Wang ; J. R. Ecker
Nature Publishing Group (NPG)
Published 2015

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Publication Date:	2015-11-26
Publisher:	Nature Publishing Group (NPG)
Print ISSN:	0028-0836
Electronic ISSN:	1476-4687
Topics:	Biology Chemistry and Pharmacology Medicine Natural Sciences in General Physics
Published by:	http://www.nature.com/

Latest Papers from Table of Contents or Articles in Press

14

Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells

W. A. Pastor ; U. J. Pape ; Y. Huang ; H. R. Henderson ; R. Lister ; M. Ko ; E. M. McLoughlin ; Y. Brudno ; S. Mahapatra ; P. Kapranov ; M. Tahiliani ; G. Q. Daley ; X. S. Liu ; J. R. Ecker ; P. M. Milos ; S. Agarwal ; A. Rao
Nature Publishing Group (NPG)
Published 2011

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Publication Date:	2011-05-10
Publisher:	Nature Publishing Group (NPG)
Print ISSN:	0028-0836
Electronic ISSN:	1476-4687
Topics:	Biology Chemistry and Pharmacology Medicine Natural Sciences in General Physics
Keywords:	Animals ; Biotinylation ; Cell Line ; Cytosine/analogs & derivatives/analysis/isolation & purification/metabolism ; DNA Methylation ; Embryonic Stem Cells/metabolism ; Exons/genetics ; Gene Expression Regulation, Developmental/genetics ; Genome/genetics ; Glucose/metabolism ; Mice ; Periodic Acid/metabolism ; Promoter Regions, Genetic/genetics ; Sequence Analysis, DNA/methods ; Transcription Initiation Site ; Transcription, Genetic/genetics
Published by:	http://www.nature.com/

Latest Papers from Table of Contents or Articles in Press

15

Genomics: ENCODE explained

J. R. Ecker ; W. A. Bickmore ; I. Barroso ; J. K. Pritchard ; Y. Gilad ; E. Segal
Nature Publishing Group (NPG)
Published 2012

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Publication Date:	2012-09-08
Publisher:	Nature Publishing Group (NPG)
Print ISSN:	0028-0836
Electronic ISSN:	1476-4687
Topics:	Biology Chemistry and Pharmacology Medicine Natural Sciences in General Physics
Keywords:	Chromatin/genetics/metabolism ; DNA/genetics ; DNA Methylation ; Deoxyribonuclease I/metabolism ; Encyclopedias as Topic ; Evolution, Molecular ; Gene Expression Regulation/genetics ; Gene Regulatory Networks ; Genome, Human/genetics ; Genomics/trends ; Humans ; Interdisciplinary Communication ; Molecular Sequence Annotation ; RNA, Untranslated/genetics ; Regulatory Sequences, Nucleic Acid/genetics ; Sequence Analysis ; Transcription Factors/metabolism
Published by:	http://www.nature.com/

Latest Papers from Table of Contents or Articles in Press

16

Processing and subcellular trafficking of ER-tethered EIN2 control response to ethylene gas

H. Qiao ; Z. Shen ; S. S. Huang ; R. J. Schmitz ; M. A. Urich ; S. P. Briggs ; J. R. Ecker
American Association for the Advancement of Science (AAAS)
Published 2012

Staff View

Publication Date:	2012-09-01
Publisher:	American Association for the Advancement of Science (AAAS)
Print ISSN:	0036-8075
Electronic ISSN:	1095-9203
Topics:	Biology Chemistry and Pharmacology Computer Science Medicine Natural Sciences in General Physics
Keywords:	Active Transport, Cell Nucleus ; Arabidopsis/drug effects/metabolism ; Arabidopsis Proteins/genetics/metabolism ; Cell Nucleus/metabolism ; Endoplasmic Reticulum/metabolism ; Ethylenes/metabolism/pharmacology ; Gases/metabolism/pharmacology ; Mutation ; Nuclear Localization Signals/genetics/metabolism ; Phosphorylation ; Protein Kinases/metabolism ; Proteolysis ; Receptors, Cell Surface/genetics/metabolism
Published by:	http://www.aaas.org/

Latest Papers from Table of Contents or Articles in Press

17

Dynamic DNA methylation: In the right place at the right time

Luo, C., Hajkova, P., Ecker, J. R.
American Association for the Advancement of Science (AAAS)
Published 2018

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Publication Date:	2018-09-28
Publisher:	American Association for the Advancement of Science (AAAS)
Print ISSN:	0036-8075
Electronic ISSN:	1095-9203
Topics:	Biology Chemistry and Pharmacology Geosciences Computer Science Medicine Natural Sciences in General Physics
Keywords:	Genetics
Published by:	http://www.aaas.org/

Latest Papers from Table of Contents or Articles in Press

18

Variables that may influence the alkaline sedimentation pattern of herpes simplex virus DNA

Ecker, J. R. ; Hyman, R. W.
Springer
Published 1981

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ISSN:	1432-8798
Source:	Springer Online Journal Archives 1860-2000
Topics:	Medicine
Notes:	Summary Herpes simplex virus (HSV) DNA sediments homogeneously on a neutral sucrose gradient but heterogeneously on an alkaline sucrose gradient. Several factors that may influence the alkaline sedimentation pattern of HSV DNA were examined: e.g., the host cell, cell density at time of infection, multiplicity of infection, and the starting material for HSV DNA purification (whether HSV-infected cells or cell-free virus). Based on alkaline sedimentation analysis, these factors appear to play little or no role in the amount of intact single-stranded HSV DNA observed.
Type of Medium:	Electronic Resource
URL:	http://dx.doi.org/10.1007/BF01314575

Articles: DFG German National Licenses

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