Search Results - (Author, Cooperation:E. Haugen)
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1M. T. Maurano ; R. Humbert ; E. Rynes ; R. E. Thurman ; E. Haugen ; H. Wang ; A. P. Reynolds ; R. Sandstrom ; H. Qu ; J. Brody ; A. Shafer ; F. Neri ; K. Lee ; T. Kutyavin ; S. Stehling-Sun ; A. K. Johnson ; T. K. Canfield ; E. Giste ; M. Diegel ; D. Bates ; R. S. Hansen ; S. Neph ; P. J. Sabo ; S. Heimfeld ; A. Raubitschek ; S. Ziegler ; C. Cotsapas ; N. Sotoodehnia ; I. Glass ; S. R. Sunyaev ; R. Kaul ; J. A. Stamatoyannopoulos
American Association for the Advancement of Science (AAAS)
Published 2012Staff ViewPublication Date: 2012-09-08Publisher: American Association for the Advancement of Science (AAAS)Print ISSN: 0036-8075Electronic ISSN: 1095-9203Topics: BiologyChemistry and PharmacologyComputer ScienceMedicineNatural Sciences in GeneralPhysicsKeywords: Alleles ; Chromatin/metabolism/ultrastructure ; Crohn Disease/genetics ; DNA/*genetics ; Deoxyribonuclease I/metabolism ; Disease/*genetics ; Electrocardiography ; Fetal Development ; Fetus/metabolism ; Gene Regulatory Networks ; *Genetic Variation ; Genome, Human ; Genome-Wide Association Study ; Humans ; Multiple Sclerosis/genetics ; Phenotype ; *Polymorphism, Single Nucleotide ; Promoter Regions, Genetic ; *Regulatory Elements, Transcriptional ; *Regulatory Sequences, Nucleic Acid ; Transcription Factors/chemistry/genetics/*metabolismPublished by: -
2A. B. Stergachis ; E. Haugen ; A. Shafer ; W. Fu ; B. Vernot ; A. Reynolds ; A. Raubitschek ; S. Ziegler ; E. M. LeProust ; J. M. Akey ; J. A. Stamatoyannopoulos
American Association for the Advancement of Science (AAAS)
Published 2013Staff ViewPublication Date: 2013-12-18Publisher: American Association for the Advancement of Science (AAAS)Print ISSN: 0036-8075Electronic ISSN: 1095-9203Topics: BiologyChemistry and PharmacologyComputer ScienceMedicineNatural Sciences in GeneralPhysicsKeywords: Codon/*genetics ; DNA Footprinting ; Deoxyribonuclease I/chemistry ; *Evolution, Molecular ; *Exome ; *Exons ; *Genome, Human ; Humans ; Polymorphism, Single Nucleotide ; Transcription Factors/genetics/*metabolismPublished by: -
3J. Vierstra ; E. Rynes ; R. Sandstrom ; M. Zhang ; T. Canfield ; R. S. Hansen ; S. Stehling-Sun ; P. J. Sabo ; R. Byron ; R. Humbert ; R. E. Thurman ; A. K. Johnson ; S. Vong ; K. Lee ; D. Bates ; F. Neri ; M. Diegel ; E. Giste ; E. Haugen ; D. Dunn ; M. S. Wilken ; S. Josefowicz ; R. Samstein ; K. H. Chang ; E. E. Eichler ; M. De Bruijn ; T. A. Reh ; A. Skoultchi ; A. Rudensky ; S. H. Orkin ; T. Papayannopoulou ; P. M. Treuting ; L. Selleri ; R. Kaul ; M. Groudine ; M. A. Bender ; J. A. Stamatoyannopoulos
American Association for the Advancement of Science (AAAS)
Published 2014Staff ViewPublication Date: 2014-11-21Publisher: American Association for the Advancement of Science (AAAS)Print ISSN: 0036-8075Electronic ISSN: 1095-9203Topics: BiologyChemistry and PharmacologyComputer ScienceMedicineNatural Sciences in GeneralPhysicsKeywords: Animals ; Base Sequence ; *Conserved Sequence ; DNA/*genetics ; Deoxyribonuclease I ; *Evolution, Molecular ; Genome, Human ; Humans ; Mice ; Regulatory Sequences, Nucleic Acid/*genetics ; Restriction Mapping ; Transcription Factors/*metabolismPublished by: -
4R. E. Thurman ; E. Rynes ; R. Humbert ; J. Vierstra ; M. T. Maurano ; E. Haugen ; N. C. Sheffield ; A. B. Stergachis ; H. Wang ; B. Vernot ; K. Garg ; S. John ; R. Sandstrom ; D. Bates ; L. Boatman ; T. K. Canfield ; M. Diegel ; D. Dunn ; A. K. Ebersol ; T. Frum ; E. Giste ; A. K. Johnson ; E. M. Johnson ; T. Kutyavin ; B. Lajoie ; B. K. Lee ; K. Lee ; D. London ; D. Lotakis ; S. Neph ; F. Neri ; E. D. Nguyen ; H. Qu ; A. P. Reynolds ; V. Roach ; A. Safi ; M. E. Sanchez ; A. Sanyal ; A. Shafer ; J. M. Simon ; L. Song ; S. Vong ; M. Weaver ; Y. Yan ; Z. Zhang ; B. Lenhard ; M. Tewari ; M. O. Dorschner ; R. S. Hansen ; P. A. Navas ; G. Stamatoyannopoulos ; V. R. Iyer ; J. D. Lieb ; S. R. Sunyaev ; J. M. Akey ; P. J. Sabo ; R. Kaul ; T. S. Furey ; J. Dekker ; G. E. Crawford ; J. A. Stamatoyannopoulos
Nature Publishing Group (NPG)
Published 2012Staff ViewPublication Date: 2012-09-08Publisher: Nature Publishing Group (NPG)Print ISSN: 0028-0836Electronic ISSN: 1476-4687Topics: BiologyChemistry and PharmacologyMedicineNatural Sciences in GeneralPhysicsKeywords: Chromatin/*genetics/*metabolism ; DNA/*genetics ; DNA Footprinting ; DNA Methylation ; DNA-Binding Proteins/metabolism ; Deoxyribonuclease I/metabolism ; *Encyclopedias as Topic ; Evolution, Molecular ; Genome, Human/*genetics ; Genomics ; Humans ; *Molecular Sequence Annotation ; Mutation Rate ; Promoter Regions, Genetic/genetics ; Regulatory Sequences, Nucleic Acid/*genetics ; Transcription Factors/metabolism ; Transcription Initiation Site ; Transcription, GeneticPublished by: -
5S. Neph ; J. Vierstra ; A. B. Stergachis ; A. P. Reynolds ; E. Haugen ; B. Vernot ; R. E. Thurman ; S. John ; R. Sandstrom ; A. K. Johnson ; M. T. Maurano ; R. Humbert ; E. Rynes ; H. Wang ; S. Vong ; K. Lee ; D. Bates ; M. Diegel ; V. Roach ; D. Dunn ; J. Neri ; A. Schafer ; R. S. Hansen ; T. Kutyavin ; E. Giste ; M. Weaver ; T. Canfield ; P. Sabo ; M. Zhang ; G. Balasundaram ; R. Byron ; M. J. MacCoss ; J. M. Akey ; M. A. Bender ; M. Groudine ; R. Kaul ; J. A. Stamatoyannopoulos
Nature Publishing Group (NPG)
Published 2012Staff ViewPublication Date: 2012-09-08Publisher: Nature Publishing Group (NPG)Print ISSN: 0028-0836Electronic ISSN: 1476-4687Topics: BiologyChemistry and PharmacologyMedicineNatural Sciences in GeneralPhysicsKeywords: DNA/*genetics ; *DNA Footprinting ; DNA Methylation ; DNA-Binding Proteins/metabolism ; Deoxyribonuclease I/metabolism ; *Encyclopedias as Topic ; Genome, Human/*genetics ; Genomic Imprinting ; Genomics ; Humans ; *Molecular Sequence Annotation ; Polymorphism, Single Nucleotide/genetics ; Regulatory Sequences, Nucleic Acid/*genetics ; Transcription Factors/*metabolism ; Transcription Initiation SitePublished by: -
6F. Yue ; Y. Cheng ; A. Breschi ; J. Vierstra ; W. Wu ; T. Ryba ; R. Sandstrom ; Z. Ma ; C. Davis ; B. D. Pope ; Y. Shen ; D. D. Pervouchine ; S. Djebali ; R. E. Thurman ; R. Kaul ; E. Rynes ; A. Kirilusha ; G. K. Marinov ; B. A. Williams ; D. Trout ; H. Amrhein ; K. Fisher-Aylor ; I. Antoshechkin ; G. DeSalvo ; L. H. See ; M. Fastuca ; J. Drenkow ; C. Zaleski ; A. Dobin ; P. Prieto ; J. Lagarde ; G. Bussotti ; A. Tanzer ; O. Denas ; K. Li ; M. A. Bender ; M. Zhang ; R. Byron ; M. T. Groudine ; D. McCleary ; L. Pham ; Z. Ye ; S. Kuan ; L. Edsall ; Y. C. Wu ; M. D. Rasmussen ; M. S. Bansal ; M. Kellis ; C. A. Keller ; C. S. Morrissey ; T. Mishra ; D. Jain ; N. Dogan ; R. S. Harris ; P. Cayting ; T. Kawli ; A. P. Boyle ; G. Euskirchen ; A. Kundaje ; S. Lin ; Y. Lin ; C. Jansen ; V. S. Malladi ; M. S. Cline ; D. T. Erickson ; V. M. Kirkup ; K. Learned ; C. A. Sloan ; K. R. Rosenbloom ; B. Lacerda de Sousa ; K. Beal ; M. Pignatelli ; P. Flicek ; J. Lian ; T. Kahveci ; D. Lee ; W. J. Kent ; M. Ramalho Santos ; J. Herrero ; C. Notredame ; A. Johnson ; S. Vong ; K. Lee ; D. Bates ; F. Neri ; M. Diegel ; T. Canfield ; P. J. Sabo ; M. S. Wilken ; T. A. Reh ; E. Giste ; A. Shafer ; T. Kutyavin ; E. Haugen ; D. Dunn ; A. P. Reynolds ; S. Neph ; R. Humbert ; R. S. Hansen ; M. De Bruijn ; L. Selleri ; A. Rudensky ; S. Josefowicz ; R. Samstein ; E. E. Eichler ; S. H. Orkin ; D. Levasseur ; T. Papayannopoulou ; K. H. Chang ; A. Skoultchi ; S. Gosh ; C. Disteche ; P. Treuting ; Y. Wang ; M. J. Weiss ; G. A. Blobel ; X. Cao ; S. Zhong ; T. Wang ; P. J. Good ; R. F. Lowdon ; L. B. Adams ; X. Q. Zhou ; M. J. Pazin ; E. A. Feingold ; B. Wold ; J. Taylor ; A. Mortazavi ; S. M. Weissman ; J. A. Stamatoyannopoulos ; M. P. Snyder ; R. Guigo ; T. R. Gingeras ; D. M. Gilbert ; R. C. Hardison ; M. A. Beer ; B. Ren
Nature Publishing Group (NPG)
Published 2014Staff ViewPublication Date: 2014-11-21Publisher: Nature Publishing Group (NPG)Print ISSN: 0028-0836Electronic ISSN: 1476-4687Topics: BiologyChemistry and PharmacologyMedicineNatural Sciences in GeneralPhysicsKeywords: Animals ; Cell Lineage/genetics ; Chromatin/genetics/metabolism ; Conserved Sequence/genetics ; DNA Replication/genetics ; Deoxyribonuclease I/metabolism ; Gene Expression Regulation/genetics ; Gene Regulatory Networks/genetics ; Genome/*genetics ; Genome-Wide Association Study ; *Genomics ; Humans ; Mice/*genetics ; *Molecular Sequence Annotation ; RNA/genetics ; Regulatory Sequences, Nucleic Acid/genetics ; Species Specificity ; Transcription Factors/metabolism ; Transcriptome/geneticsPublished by: -
7A. B. Stergachis ; S. Neph ; R. Sandstrom ; E. Haugen ; A. P. Reynolds ; M. Zhang ; R. Byron ; T. Canfield ; S. Stelhing-Sun ; K. Lee ; R. E. Thurman ; S. Vong ; D. Bates ; F. Neri ; M. Diegel ; E. Giste ; D. Dunn ; J. Vierstra ; R. S. Hansen ; A. K. Johnson ; P. J. Sabo ; M. S. Wilken ; T. A. Reh ; P. M. Treuting ; R. Kaul ; M. Groudine ; M. A. Bender ; E. Borenstein ; J. A. Stamatoyannopoulos
Nature Publishing Group (NPG)
Published 2014Staff ViewPublication Date: 2014-11-21Publisher: Nature Publishing Group (NPG)Print ISSN: 0028-0836Electronic ISSN: 1476-4687Topics: BiologyChemistry and PharmacologyMedicineNatural Sciences in GeneralPhysicsKeywords: Animals ; Conserved Sequence/*genetics ; DNA Footprinting ; *Evolution, Molecular ; Gene Expression Regulation, Developmental/genetics ; Gene Regulatory Networks/genetics ; Humans ; Mammals/*genetics ; Mice ; Regulatory Sequences, Nucleic Acid/*genetics ; Transcription Factors/*genetics/*metabolismPublished by: -
8Staff View
ISSN: 0016-8890Topics: German, Dutch and Scandinavian StudiesURL: -
9Staff View
ISSN: 0024-3841Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002Topics: Linguistics and Literary StudiesType of Medium: Electronic ResourceURL: -
10Staff View
ISSN: 0024-3841Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002Topics: Linguistics and Literary StudiesType of Medium: Electronic ResourceURL: -
11Staff View
ISSN: 1572-9478Source: Springer Online Journal Archives 1860-2000Topics: PhysicsNotes: Abstract A precise and efficient algorithm is developed for determining the locations of radio beacons (e.g. of the ARGOS or COSPAS/SARSAT type) based on Doppler shift measurements in overflying satellites. The method distinguishes itself through: (1) the use of a very compact analytic orbital theory valid for all eccentricities, (2) autonomous orbit improvement based on Doppler data for one or more local reference beacons accessible at a single LUT, (3) simultaneous orbit improvement and calculation of beacon coordinates for an arbitrary number of satellites, satellite passes, and beacons, and (4) very efficient semi-analytic matrix inversion by partitioning into global, semi-global, and local parameters. The algorithm has been implemented in a FORTRAN program which can be run on a PC. Error statistics are presented from applications of the program to a large number of actual Doppler curves obtained with the ARGOS and COSPAS/SARSAT systems.Type of Medium: Electronic ResourceURL: -
12Staff View
ISSN: 0191-6599Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002Topics: HistoryPolitical ScienceType of Medium: Electronic ResourceURL: -
13Keller, M. D. ; Shapiro, L. P. ; Haugen, E. M. ; Cucci, T. L. ; Sherr, E. B. ; Sherr, B. F.
Springer
Published 1994Staff ViewISSN: 1432-184XSource: Springer Online Journal Archives 1860-2000Topics: BiologyNotes: Abstract Using fluorescently-labeled bacteria and detection by flow cytometry and epifluorescence microscopy, we demonstrate inducible mixotrophy in a marine photosynthetic flagellate, Ochromonas sp. (class Chrysophyceae). Phagotrophic uptake of bacteria increases under conditions of low or limiting light and nutrients, but deceases in periods of prolonged darkness; sustained phagotrophy may require light. In addition, this alga appears to discriminate between and preferentially ingest different types of bacteria. Although this clone is primarily photosynthetic, phagotrophy contributes to its nutrition, especially when light or nutrients limit photosynthesis.Type of Medium: Electronic ResourceURL: -
14Staff View
ISSN: 1573-093XSource: Springer Online Journal Archives 1860-2000Topics: PhysicsType of Medium: Electronic ResourceURL: -
15Staff View
ISSN: 1573-093XSource: Springer Online Journal Archives 1860-2000Topics: PhysicsNotes: Abstract The wavelength shifts of approximately 8000 absorption elements in the Hα-line from spectra of 66 different sunspot regions have been measured. The average velocity field in the chromosphere close to sunspots is determined. Inside 15000 km from the spot's penumbral rim the average velocity vector is directed towards the spot and downwards in the chromosphere; the angle with the horizontal direction is on the average equal to 20°. The magnitude of the average velocity vector shows a maximum of 6.8 ± 1.2 km/sec just outside the penumbral rim and decreases quickly with increasing distance from the spot. Outside 15000 km from the penumbral rim the average velocity vector is small (∼-0.7 km/sec) and directed nearly vertically outwards from the sun. No significant tangential component of the average velocity field is found. The deviations of the individual elements from the average velocity field are on the average larger than the value of the average velocity. The total rms deviation in the line of sight velocity is equal to 6.8 km/sec. Thus, a large number of elements, as used in this investigation, is required to give significant values of the average velocity vector. We have also observed velocities in the penumbra. The average velocity vector is here probably small and its direction uncertain. The rms deviation in the line of sight velocities observed in the penumbra is equal to 7.5 km/sec.Type of Medium: Electronic ResourceURL: -
16Staff View
ISSN: 0021-9304Keywords: Chemistry ; Polymer and Materials ScienceSource: Wiley InterScience Backfile Collection 1832-2000Topics: MedicineTechnologyNotes: Results from 197 subcutaneous implants on rats and 40 on mice of three different dental biomaterials were studied with emphasis on methodological evaluations. The types of implants employed allowed a differentiation between the materials based on the tissue reactions induced, but the degree of response recorded depended on the technique and the animal employed. The main problems encountered were the effect of operative trauma in short-term experiments, loss of material/tissue interface, dislodgement or tearing of sections if the materials remained in situ, folding and distortion of tissue, and difficulties in orientation of specimens for sectioning. The tube implant supplied with a window and sectioned perpendicularly on the long axis of the tube gave the least methodological problems. This “window technique” is therefore recommended as the method of choice for subcutaneous implantations. Cell density evaluations allowed quantitative determinations of the cellular response.Additional Material: 10 Ill.Type of Medium: Electronic ResourceURL: