Search Results - (Author, Cooperation:D. Bates)
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1Oliver E J Wing, Paul D Bates, Andrew M Smith, Christopher C Sampson, Kris A Johnson, Joseph Fargione and Philip Morefield
Institute of Physics (IOP)
Published 2018Staff ViewPublication Date: 2018-03-06Publisher: Institute of Physics (IOP)Print ISSN: 1748-9318Electronic ISSN: 1748-9326Topics: BiologyEnergy, Environment Protection, Nuclear Power EngineeringPublished by: -
2Kannan, P., Kretzschmar, W. W., Winter, H., Warren, D., Bates, R., Allen, P. D., Syed, N., Irving, B., Papiez, B. W., Kaeppler, J., Markelc, B., Kinchesh, P., Gilchrist, S., Smart, S., Schnabel, J. A., Maughan, T., Harris, A. L., Muschel, R. J., Partridge, M., Sharma, R. A., Kersemans, V.
The American Association for Cancer Research (AACR)
Published 2018Staff ViewPublication Date: 2018-10-02Publisher: The American Association for Cancer Research (AACR)Print ISSN: 1078-0432Electronic ISSN: 1557-3265Topics: MedicinePublished by: -
3G. J. Schumann ; P. D. Bates ; J. C. Neal ; K. M. Andreadis
Nature Publishing Group (NPG)
Published 2014Staff ViewPublication Date: 2014-03-14Publisher: Nature Publishing Group (NPG)Print ISSN: 0028-0836Electronic ISSN: 1476-4687Topics: BiologyChemistry and PharmacologyMedicineNatural Sciences in GeneralPhysicsKeywords: *Computer Simulation ; Disaster Planning ; Disasters/economics/*prevention & control ; Floods/economics/*statistics & numerical data ; Humans ; Models, Theoretical ; Satellite ImageryPublished by: -
4M. Bailes ; S. D. Bates ; V. Bhalerao ; N. D. Bhat ; M. Burgay ; S. Burke-Spolaor ; N. D'Amico ; S. Johnston ; M. J. Keith ; M. Kramer ; S. R. Kulkarni ; L. Levin ; A. G. Lyne ; S. Milia ; A. Possenti ; L. Spitler ; B. Stappers ; W. van Straten
American Association for the Advancement of Science (AAAS)
Published 2011Staff ViewPublication Date: 2011-08-27Publisher: American Association for the Advancement of Science (AAAS)Print ISSN: 0036-8075Electronic ISSN: 1095-9203Topics: BiologyChemistry and PharmacologyComputer ScienceMedicineNatural Sciences in GeneralPhysicsPublished by: -
5S. Neph ; J. Vierstra ; A. B. Stergachis ; A. P. Reynolds ; E. Haugen ; B. Vernot ; R. E. Thurman ; S. John ; R. Sandstrom ; A. K. Johnson ; M. T. Maurano ; R. Humbert ; E. Rynes ; H. Wang ; S. Vong ; K. Lee ; D. Bates ; M. Diegel ; V. Roach ; D. Dunn ; J. Neri ; A. Schafer ; R. S. Hansen ; T. Kutyavin ; E. Giste ; M. Weaver ; T. Canfield ; P. Sabo ; M. Zhang ; G. Balasundaram ; R. Byron ; M. J. MacCoss ; J. M. Akey ; M. A. Bender ; M. Groudine ; R. Kaul ; J. A. Stamatoyannopoulos
Nature Publishing Group (NPG)
Published 2012Staff ViewPublication Date: 2012-09-08Publisher: Nature Publishing Group (NPG)Print ISSN: 0028-0836Electronic ISSN: 1476-4687Topics: BiologyChemistry and PharmacologyMedicineNatural Sciences in GeneralPhysicsKeywords: DNA/*genetics ; *DNA Footprinting ; DNA Methylation ; DNA-Binding Proteins/metabolism ; Deoxyribonuclease I/metabolism ; *Encyclopedias as Topic ; Genome, Human/*genetics ; Genomic Imprinting ; Genomics ; Humans ; *Molecular Sequence Annotation ; Polymorphism, Single Nucleotide/genetics ; Regulatory Sequences, Nucleic Acid/*genetics ; Transcription Factors/*metabolism ; Transcription Initiation SitePublished by: -
6J. Vierstra ; E. Rynes ; R. Sandstrom ; M. Zhang ; T. Canfield ; R. S. Hansen ; S. Stehling-Sun ; P. J. Sabo ; R. Byron ; R. Humbert ; R. E. Thurman ; A. K. Johnson ; S. Vong ; K. Lee ; D. Bates ; F. Neri ; M. Diegel ; E. Giste ; E. Haugen ; D. Dunn ; M. S. Wilken ; S. Josefowicz ; R. Samstein ; K. H. Chang ; E. E. Eichler ; M. De Bruijn ; T. A. Reh ; A. Skoultchi ; A. Rudensky ; S. H. Orkin ; T. Papayannopoulou ; P. M. Treuting ; L. Selleri ; R. Kaul ; M. Groudine ; M. A. Bender ; J. A. Stamatoyannopoulos
American Association for the Advancement of Science (AAAS)
Published 2014Staff ViewPublication Date: 2014-11-21Publisher: American Association for the Advancement of Science (AAAS)Print ISSN: 0036-8075Electronic ISSN: 1095-9203Topics: BiologyChemistry and PharmacologyComputer ScienceMedicineNatural Sciences in GeneralPhysicsKeywords: Animals ; Base Sequence ; *Conserved Sequence ; DNA/*genetics ; Deoxyribonuclease I ; *Evolution, Molecular ; Genome, Human ; Humans ; Mice ; Regulatory Sequences, Nucleic Acid/*genetics ; Restriction Mapping ; Transcription Factors/*metabolismPublished by: -
7M. T. Maurano ; R. Humbert ; E. Rynes ; R. E. Thurman ; E. Haugen ; H. Wang ; A. P. Reynolds ; R. Sandstrom ; H. Qu ; J. Brody ; A. Shafer ; F. Neri ; K. Lee ; T. Kutyavin ; S. Stehling-Sun ; A. K. Johnson ; T. K. Canfield ; E. Giste ; M. Diegel ; D. Bates ; R. S. Hansen ; S. Neph ; P. J. Sabo ; S. Heimfeld ; A. Raubitschek ; S. Ziegler ; C. Cotsapas ; N. Sotoodehnia ; I. Glass ; S. R. Sunyaev ; R. Kaul ; J. A. Stamatoyannopoulos
American Association for the Advancement of Science (AAAS)
Published 2012Staff ViewPublication Date: 2012-09-08Publisher: American Association for the Advancement of Science (AAAS)Print ISSN: 0036-8075Electronic ISSN: 1095-9203Topics: BiologyChemistry and PharmacologyComputer ScienceMedicineNatural Sciences in GeneralPhysicsKeywords: Alleles ; Chromatin/metabolism/ultrastructure ; Crohn Disease/genetics ; DNA/*genetics ; Deoxyribonuclease I/metabolism ; Disease/*genetics ; Electrocardiography ; Fetal Development ; Fetus/metabolism ; Gene Regulatory Networks ; *Genetic Variation ; Genome, Human ; Genome-Wide Association Study ; Humans ; Multiple Sclerosis/genetics ; Phenotype ; *Polymorphism, Single Nucleotide ; Promoter Regions, Genetic ; *Regulatory Elements, Transcriptional ; *Regulatory Sequences, Nucleic Acid ; Transcription Factors/chemistry/genetics/*metabolismPublished by: -
8A. B. Stergachis ; S. Neph ; R. Sandstrom ; E. Haugen ; A. P. Reynolds ; M. Zhang ; R. Byron ; T. Canfield ; S. Stelhing-Sun ; K. Lee ; R. E. Thurman ; S. Vong ; D. Bates ; F. Neri ; M. Diegel ; E. Giste ; D. Dunn ; J. Vierstra ; R. S. Hansen ; A. K. Johnson ; P. J. Sabo ; M. S. Wilken ; T. A. Reh ; P. M. Treuting ; R. Kaul ; M. Groudine ; M. A. Bender ; E. Borenstein ; J. A. Stamatoyannopoulos
Nature Publishing Group (NPG)
Published 2014Staff ViewPublication Date: 2014-11-21Publisher: Nature Publishing Group (NPG)Print ISSN: 0028-0836Electronic ISSN: 1476-4687Topics: BiologyChemistry and PharmacologyMedicineNatural Sciences in GeneralPhysicsKeywords: Animals ; Conserved Sequence/*genetics ; DNA Footprinting ; *Evolution, Molecular ; Gene Expression Regulation, Developmental/genetics ; Gene Regulatory Networks/genetics ; Humans ; Mammals/*genetics ; Mice ; Regulatory Sequences, Nucleic Acid/*genetics ; Transcription Factors/*genetics/*metabolismPublished by: -
9F. Yue ; Y. Cheng ; A. Breschi ; J. Vierstra ; W. Wu ; T. Ryba ; R. Sandstrom ; Z. Ma ; C. Davis ; B. D. Pope ; Y. Shen ; D. D. Pervouchine ; S. Djebali ; R. E. Thurman ; R. Kaul ; E. Rynes ; A. Kirilusha ; G. K. Marinov ; B. A. Williams ; D. Trout ; H. Amrhein ; K. Fisher-Aylor ; I. Antoshechkin ; G. DeSalvo ; L. H. See ; M. Fastuca ; J. Drenkow ; C. Zaleski ; A. Dobin ; P. Prieto ; J. Lagarde ; G. Bussotti ; A. Tanzer ; O. Denas ; K. Li ; M. A. Bender ; M. Zhang ; R. Byron ; M. T. Groudine ; D. McCleary ; L. Pham ; Z. Ye ; S. Kuan ; L. Edsall ; Y. C. Wu ; M. D. Rasmussen ; M. S. Bansal ; M. Kellis ; C. A. Keller ; C. S. Morrissey ; T. Mishra ; D. Jain ; N. Dogan ; R. S. Harris ; P. Cayting ; T. Kawli ; A. P. Boyle ; G. Euskirchen ; A. Kundaje ; S. Lin ; Y. Lin ; C. Jansen ; V. S. Malladi ; M. S. Cline ; D. T. Erickson ; V. M. Kirkup ; K. Learned ; C. A. Sloan ; K. R. Rosenbloom ; B. Lacerda de Sousa ; K. Beal ; M. Pignatelli ; P. Flicek ; J. Lian ; T. Kahveci ; D. Lee ; W. J. Kent ; M. Ramalho Santos ; J. Herrero ; C. Notredame ; A. Johnson ; S. Vong ; K. Lee ; D. Bates ; F. Neri ; M. Diegel ; T. Canfield ; P. J. Sabo ; M. S. Wilken ; T. A. Reh ; E. Giste ; A. Shafer ; T. Kutyavin ; E. Haugen ; D. Dunn ; A. P. Reynolds ; S. Neph ; R. Humbert ; R. S. Hansen ; M. De Bruijn ; L. Selleri ; A. Rudensky ; S. Josefowicz ; R. Samstein ; E. E. Eichler ; S. H. Orkin ; D. Levasseur ; T. Papayannopoulou ; K. H. Chang ; A. Skoultchi ; S. Gosh ; C. Disteche ; P. Treuting ; Y. Wang ; M. J. Weiss ; G. A. Blobel ; X. Cao ; S. Zhong ; T. Wang ; P. J. Good ; R. F. Lowdon ; L. B. Adams ; X. Q. Zhou ; M. J. Pazin ; E. A. Feingold ; B. Wold ; J. Taylor ; A. Mortazavi ; S. M. Weissman ; J. A. Stamatoyannopoulos ; M. P. Snyder ; R. Guigo ; T. R. Gingeras ; D. M. Gilbert ; R. C. Hardison ; M. A. Beer ; B. Ren
Nature Publishing Group (NPG)
Published 2014Staff ViewPublication Date: 2014-11-21Publisher: Nature Publishing Group (NPG)Print ISSN: 0028-0836Electronic ISSN: 1476-4687Topics: BiologyChemistry and PharmacologyMedicineNatural Sciences in GeneralPhysicsKeywords: Animals ; Cell Lineage/genetics ; Chromatin/genetics/metabolism ; Conserved Sequence/genetics ; DNA Replication/genetics ; Deoxyribonuclease I/metabolism ; Gene Expression Regulation/genetics ; Gene Regulatory Networks/genetics ; Genome/*genetics ; Genome-Wide Association Study ; *Genomics ; Humans ; Mice/*genetics ; *Molecular Sequence Annotation ; RNA/genetics ; Regulatory Sequences, Nucleic Acid/genetics ; Species Specificity ; Transcription Factors/metabolism ; Transcriptome/geneticsPublished by: -
10R. E. Thurman ; E. Rynes ; R. Humbert ; J. Vierstra ; M. T. Maurano ; E. Haugen ; N. C. Sheffield ; A. B. Stergachis ; H. Wang ; B. Vernot ; K. Garg ; S. John ; R. Sandstrom ; D. Bates ; L. Boatman ; T. K. Canfield ; M. Diegel ; D. Dunn ; A. K. Ebersol ; T. Frum ; E. Giste ; A. K. Johnson ; E. M. Johnson ; T. Kutyavin ; B. Lajoie ; B. K. Lee ; K. Lee ; D. London ; D. Lotakis ; S. Neph ; F. Neri ; E. D. Nguyen ; H. Qu ; A. P. Reynolds ; V. Roach ; A. Safi ; M. E. Sanchez ; A. Sanyal ; A. Shafer ; J. M. Simon ; L. Song ; S. Vong ; M. Weaver ; Y. Yan ; Z. Zhang ; B. Lenhard ; M. Tewari ; M. O. Dorschner ; R. S. Hansen ; P. A. Navas ; G. Stamatoyannopoulos ; V. R. Iyer ; J. D. Lieb ; S. R. Sunyaev ; J. M. Akey ; P. J. Sabo ; R. Kaul ; T. S. Furey ; J. Dekker ; G. E. Crawford ; J. A. Stamatoyannopoulos
Nature Publishing Group (NPG)
Published 2012Staff ViewPublication Date: 2012-09-08Publisher: Nature Publishing Group (NPG)Print ISSN: 0028-0836Electronic ISSN: 1476-4687Topics: BiologyChemistry and PharmacologyMedicineNatural Sciences in GeneralPhysicsKeywords: Chromatin/*genetics/*metabolism ; DNA/*genetics ; DNA Footprinting ; DNA Methylation ; DNA-Binding Proteins/metabolism ; Deoxyribonuclease I/metabolism ; *Encyclopedias as Topic ; Evolution, Molecular ; Genome, Human/*genetics ; Genomics ; Humans ; *Molecular Sequence Annotation ; Mutation Rate ; Promoter Regions, Genetic/genetics ; Regulatory Sequences, Nucleic Acid/*genetics ; Transcription Factors/metabolism ; Transcription Initiation Site ; Transcription, GeneticPublished by: -
11M A Trigg, C E Birch, J C Neal, P D Bates, A Smith, C C Sampson, D Yamazaki, Y Hirabayashi, F Pappenberger, E Dutra, P J Ward, H C Winsemius, P Salamon, F Dottori, R Rudari, M S Kappes, A L Simpson, G Hadzilacos and T J Fewtrell
Institute of Physics (IOP)
Published 2018Staff ViewPublication Date: 2018-09-11Publisher: Institute of Physics (IOP)Print ISSN: 1748-9318Electronic ISSN: 1748-9326Topics: BiologyEnergy, Environment Protection, Nuclear Power EngineeringPublished by: -
12Comment on: Symmetry considerations and the formation of isotopically heavy ozone and carbon dioxideStaff View
ISSN: 1089-7690Source: AIP Digital ArchiveTopics: PhysicsChemistry and PharmacologyNotes: The mass−independent isotopic enrichment in the formation of ozone and carbon dioxide has been explained by symmetry considerations.(AIP)Type of Medium: Electronic ResourceURL: -
13Staff View
ISSN: 1089-7690Source: AIP Digital ArchiveTopics: PhysicsChemistry and PharmacologyNotes: The dependence of the rate coefficient k for termolecular association between diatomic ions A+ and diatomic molecules B on the temperature T of the ambient gas M is considered. There is experimental evidence that k decreases rapidly as T is increased if the association energy is small. A proposal that this behavior may be explained by the introduction of a super-complex AB+⋅M is rejected. It is shown that required T variation could ensue if the reactants in the energized AB+* complex repel one another at some relative orientations.Type of Medium: Electronic ResourceURL: -
14Staff View
ISSN: 1089-7690Source: AIP Digital ArchiveTopics: PhysicsChemistry and PharmacologyNotes: An explanation is proposed for the observed enrichment of the symmetric isomer OXO of heavy ozone (X being used to denote a heavy O atom). This is that the energized complex may undergo a flip in which one of the end atoms ceases to be effectively bound to the central atom and becomes effectively bound to the other end atom. The measured [OXO]:[OOX] ratio is reproduced if the flip frequency is the same as the dissociation frequency. Calculations are carried out on the variation of the enhancement with the ambient gas density. It is reasoned that the enhancement observed in the stratosphere is that arising in termolecular association and that the lower values obtained in laboratory experiments are artifacts. The measured isotopic enrichment of carbon dioxide may arise from termolecular association O+CO+CO→CO2+CO, from enriched OXO* that is generated in another association process or from both. The apparent scatter in the results is much greater than would be expected from the precision of the measurements. It is suggested that this may be an artifact (similar in origin to those for ozone).Type of Medium: Electronic ResourceURL: -
15Ferrari, MD ; James, MH ; Bates, D ; Pilgrim, A ; Ashford, E ; Anderson, BA ; Nappi, G
USA/Oxford, UK : Blackwell Science Ltd
Published 1994Staff ViewISSN: 1468-2982Source: Blackwell Publishing Journal Backfiles 1879-2005Topics: MedicineNotes: Oral sumatriptan in a dose of 100 mg aborts about 60% of migraine attacks within 2 h, but the headache may recur within 24 h. We investigated: (i) the incidence of headache recurrence after oral sumatriptan, (ii) whether a second tablet of sumatriptan at 2 h increases initial efficacy and/or (iii) prevents headache recurrence and (iv) whether a further tablet of sumatriptan treats headache recurrence. In a randomized, parallel-group clinical trial, 1246 patients treated one to three migraine attacks (with or without aura) with 100 mg oral sumatriptan. Two hours later they all took a double-blind randomized second tablet of sumatriptan (group I) or placebo (group II). Patients who initially improved, but then experienced headache recurrence took a further double-blind randomized tablet of sumatriptan or placebo. Proportions of patients who improved from moderate/severe headache to mild/none were similar in groups I and II at 2 h (55 vs 56%) and 4 h (80 vs 77%). Incidences of headache recurrence (moderate/severe-any grade of headache) and median times to headache recurrence were also similar: 22-32% at 16 h in group I and 25-33% at 16.5 h in group II. Sumatriptan was superior to placebo in treating headache recurrence: 74 vs 49% (p = 0.017) in group I and 70 vs 30% (p = 0.0001) in group II. Thus, one-fourth of patients experience headache recurrence at about 16 h after successful treatment of a migraine attack with 100 mg oral sumatriptan. A second tablet of sumatriptan at 2 h does not increase initial efficacy and neither prevents nor delays headache recurrence. A further tablet of sumatriptan is, however, highly effective in treating headache recurrence. All dose regimens were well tolerated.Type of Medium: Electronic ResourceURL: -
16Bates, D. V. ; Klassen, G. A. ; Broadhurst, C. A. ; Peretz, D. I. ; Anthonisen, N. R. ; Smith, H. J.
Oxford, UK : Blackwell Publishing Ltd
Published 1965Staff ViewISSN: 1749-6632Source: Blackwell Publishing Journal Backfiles 1879-2005Topics: Natural Sciences in GeneralType of Medium: Electronic ResourceURL: -
17Staff View
ISSN: 1089-7690Source: AIP Digital ArchiveTopics: PhysicsChemistry and PharmacologyNotes: The decrease of the association rate coefficient k with increase in temperature T is much sharper than the norm if readily accessible rotational levels of the complex formed carry so much energy that insufficient remains to excite the vibrational modes of high frequency. It is suggested that this may be the main reason for the reported difference between the T dependence of the k's for N+2 +2N2 and O+2+2O2 association.Type of Medium: Electronic ResourceURL: -
18Staff View
ISSN: 1089-7690Source: AIP Digital ArchiveTopics: PhysicsChemistry and PharmacologyNotes: It has been proposed recently that the existence of a slightly endothermic mode may facilitate ion–molecule association by providing a pass leading to the most stable configuration of the ion formed and also by lengthening the lifetime of the activated complex. Accepting the first of these effects the second is investigated and shown to be generally inappreciable.Type of Medium: Electronic ResourceURL: -
19Staff View
ISSN: 1365-246XSource: Blackwell Publishing Journal Backfiles 1879-2005Topics: GeosciencesNotes: Carbon dioxide and carbon monoxide: The rate of photo-dissociation of CO2 is appreciable only in the region above about 100 km. If local equilibrium prevails the carbon would occur mainly as the monoxide in this region, and as the dioxide below. However, oxidation may proceed so slowly that the life of a CO molecule is long compared with the characteristic time associated with atmospheric mixing effects. In this case the CO resulting from photo-dissociation would not be confined to above the 100 km level, but would extend much lower; its total abundance could scarcely be great enough to produce the observed absorption lines. It is estimated that the various forms of combustion taking place on the Earth would provide the CO content of the atmosphere within perhaps four years or even less. Methane: Dissociation of CH4 in the upper atmosphere is brought about mainly by collision processes. These prevent the existence of appreciable CH4 above the 100 km level and probably keep the concentration low even down to 70 km. The yield to date from oil wells and coal mines appears to be less than the amount of the gas now in the atmosphere. Seepage from fuel beds, and the anaerobic decay of vegetable matter, are the only obvious naturally occurring sources of significance. As far as can be judged at least ten years (and probably much longer) is required for the production of the atmospheric abundance. Nitrous oxide : Information on the necessary rate of formation of N2O is obtained by calculating the photo-dissociation rate. One hypothesis is that soil micro-organisms produce the gas, but it appears that the yield would only be sufficient if N2O were a major end-product of denitrification. Many of the homogeneous gas reactions suggested by earlier workers must be rejected, since there is an inadequate supply of the requisite parent particles. The only acceptable parent particles seem to be those arising directly or indirectly from the photo-dissociation of O2 in the Herzberg continuum. Various reactions involving O, O3 and N2 are discussed. Though they are very slow they might nevertheless give rise to sufficient N2O.Type of Medium: Electronic ResourceURL: -
20Maxwell, G. M. ; Nobbs, S. ; Bates, D. J. ; Fourie, F.
Oxford, UK : Blackwell Publishing Ltd
Published 1988Staff ViewISSN: 1440-1681Source: Blackwell Publishing Journal Backfiles 1879-2005Topics: MedicineNotes: 1. The oxygen consumption (V̇o2):) of unrestrained rats given a ‘cafeteria’ (high energy, high fat) or control diet was studied. The resting values of V̇o2 were the same in each dietary group, whether maintained at 26°C or 6°C. This negative finding suggests that cafeteria feeding is not an important cause of diet-induced thermogenesis (DIT).2. The response of each group of rats to injected noradrenaline or dopamine was also studied. Each catecholamine could increase V̇o2 values but the response was much less in cold-adapted rats measured at 6°C. In all experimental circumstances the dopamine response exceeded that of noradrenaline. There was no evidence that the cafeteria diet consistently increased the response to either catecholamine.3. These results suggest that DIT cannot be equated with non-shivering thermogenesis (NST). Furthermore, it is suggested that dopamine would be a better agent for measuring the oxygen equivalent of NST, since it would stimulate the dopamine receptors as well as the α- and β-adrenoreceptors of brown fat.Type of Medium: Electronic ResourceURL: